Mercurial > repos > iuc > enasearch_retrieve_data
view macros.xml @ 1:0719cfc3ebcb draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/enasearch commit 11ee7ac206d41894c0b6a11f2439aaea490824f0
author | iuc |
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date | Thu, 09 Nov 2017 13:08:14 -0500 |
parents | cbc24be56f7b |
children | 2f0210706f95 |
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<?xml version="1.0" ?> <macros> <token name="@WRAPPER_VERSION@">0.1.1</token> <xml name="version"> <version_command>@WRAPPER_VERSION@</version_command> </xml> <xml name="requirements"> <requirements> <requirement type="package" version="@WRAPPER_VERSION@">enasearch</requirement> <yield/> </requirements> </xml> <xml name="citations"/> <token name="@IDS@"> <![CDATA[ #for $id in str($ids).split(',') --ids '$id' #end for ]]> </token> <xml name="display_opt"> <conditional name="display_opt"> <param argument="--display" type="select" label="Display option to specify the display format"> <expand macro="display_options"/> </param> <expand macro="when_display_options"/> </conditional> </xml> <token name="@DISPLAY@"> <![CDATA[ --display '$display_opt.display' #if $display_opt.display == 'fasta' or $display_opt.display == 'fastq' #if str($display_opt.range_start) != '' and str($display_opt.range_stop) != '' --subseq_range '$display_opt.range_start'-'$display_opt.range_stop' #end if #else #if str($display_opt.offset) != '' --offset '$display_opt.offset' #end if #if str($display_opt.length) != '' --length '$display_opt.length' #end if #end if ]]> </token> <xml name="expanded"> <param argument="--expanded" type="boolean" truevalue="--expanded" falsevalue="" label="Expand a CON record?"/> </xml> <xml name="header"> <param argument="--header" type="boolean" truevalue="--header" falsevalue="" label="Obtain only the header of a record?"/> </xml> <xml name="accession"> <param argument="--accession" type="text" label="Accession id" help="Study accessions (ERP, SRP, DRP, PRJ prefixes), experiment accessions (ERX, SRX, DRX prefixes), sample accessions (ERS, SRS, DRS, SAM prefixes) and run accessions"/> </xml> <token name="@FIELDS@"> <![CDATA[ #if $fields #for $f in str($fields).split(',') --fields '$f' #end for #end if ]]> </token> <xml name="change_format"> <change_format> <when input="display_opt.display" value="fasta" format="fasta" /> <when input="display_opt.display" value="fastq" format="fastq" /> <when input="display_opt.display" value="html" format="html" /> <when input="display_opt.display" value="text" format="txt" /> <when input="display_opt.display" value="xml" format="xml" /> </change_format> </xml> <token name="@SEARCH_DATA_DISPLAY@"> <![CDATA[ --display '$query_type.res.display_opt.display' #if $query_type.res.display_opt.display != 'fasta' and $query_type.res.display_opt.display != 'fastq' #if str($query_type.res.display_opt.offset) != '' --offset '$query_type.res.display_opt.offset' #end if #if str($query_type.res.display_opt.length) != '' --length '$query_type.res.display_opt.length' #end if #if $query_type.res.display_opt.display == 'report' #for $f in str($query_type.res.display_opt.fields).split(',') --fields '$f' #end for #if $query_type.res.display_opt.sortfields #for $f in str($query_type.res.display_opt.sortfields).split(',') --sortfields '$f' #end for #end if #end if #end if ]]> </token> </macros>