Mercurial > repos > iuc > enasearch_retrieve_run_report

diff enasearch_retrieve_run_report.xml @ 0:c320e878909a draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/enasearch/ commit 6eda25f5cccc0cf9be09c38a8b48d37aff56ed87
author iuc
date Tue, 29 Aug 2017 04:13:49 -0400
parents
children ccc0e55c9e16
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/enasearch_retrieve_run_report.xml	Tue Aug 29 04:13:49 2017 -0400
@@ -0,0 +1,42 @@
+<tool id="enasearch_retrieve_run_report" name="Retrieve a run report" version="@WRAPPER_VERSION@.0">
+    <description></description>
+    <macros>
+        <import>macros.xml</import>
+        <import>search_macros.xml</import>
+    </macros>
+    <expand macro="requirements"/>
+    <expand macro="version"/>
+    <command detect_errors="aggressive"><![CDATA[
+enasearch
+    retrieve_run_report
+    --accession '$accession'
+    @FIELDS@
+    --file '$output'
+    ]]></command>
+    <inputs>
+        <expand macro="accession"/>
+        <param argument="--fields" type="select" optional="true" multiple="true" label="Fields to return">
+            <expand macro="run_fields"/>
+        </param>
+    </inputs>
+    <outputs>
+        <data name="output" format="tabular" label="${tool.name} on ${accession}"/>
+    </outputs>
+    <tests>
+        <test>
+            <param name="accession" value="SRX017289"/>
+            <output name="output" md5="0f0c6df8d03b9b26b2906921524d7ad1"/>
+        </test>
+        <test>
+            <param name="accession" value="SRX017289"/>
+            <param name="fields" value="study_accession,study_title,sra_aspera"/>
+            <output name="output" md5="c6e42cb421832aafac42de4bfc9cc7e8"/>
+        </test>
+    </tests>
+    <help><![CDATA[
+**What it does**
+
+This tool retrieve a run report for an accession id
+    ]]></help>
+    <expand macro="citations"/>
+</tool>