Mercurial > repos > iuc > ensembl_vep

annotate test-data/input_test2.vcf @ 5:e43f513583ee draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ensembl_vep commit 81b5c01b8b191d3b3762c4927ba7d9bd7dac1a4f
author iuc
date Mon, 02 Sep 2024 10:15:34 +0000
parents 7303183cdb87
children
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7303183cdb87 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ensembl_vep commit 2db33cd5bcf5e2d7e3a43f11855c4cfc3b1b9f56
iuc
parents:
diff changeset
1 ##fileformat=VCFv4.1
7303183cdb87 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ensembl_vep commit 2db33cd5bcf5e2d7e3a43f11855c4cfc3b1b9f56
iuc
parents:
diff changeset
2 ##contig=<ID=21,assembly=GCF_000001405.26,length=46709983>
7303183cdb87 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ensembl_vep commit 2db33cd5bcf5e2d7e3a43f11855c4cfc3b1b9f56
iuc
parents:
diff changeset
3 ##contig=<ID=22,assembly=GCF_000001405.26,length=50818468>
7303183cdb87 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ensembl_vep commit 2db33cd5bcf5e2d7e3a43f11855c4cfc3b1b9f56
iuc
parents:
diff changeset
4 ##ALT=<ID=CNV,Description="Copy Number Polymorphism">
7303183cdb87 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ensembl_vep commit 2db33cd5bcf5e2d7e3a43f11855c4cfc3b1b9f56
iuc
parents:
diff changeset
5 ##INFO=<ID=SVLEN,Number=.,Type=Integer,Description="Difference in length between REF and ALT alleles">
7303183cdb87 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ensembl_vep commit 2db33cd5bcf5e2d7e3a43f11855c4cfc3b1b9f56
iuc
parents:
diff changeset
6 ##INFO=<ID=SVTYPE,Number=1,Type=String,Description="Type of structural variant">
7303183cdb87 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ensembl_vep commit 2db33cd5bcf5e2d7e3a43f11855c4cfc3b1b9f56
iuc
parents:
diff changeset
7 #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT HG00096
7303183cdb87 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ensembl_vep commit 2db33cd5bcf5e2d7e3a43f11855c4cfc3b1b9f56
iuc
parents:
diff changeset
8 21 5733 rs142513484 C T . . . GT 0|0