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comparison ensembl_vep.xml @ 4:fdbd97ff825e draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ensembl_vep commit d55061b50f807285fc8635de681992a61621447e
author iuc
date Wed, 23 Aug 2023 16:15:21 +0000
parents ff0a8cda0c0b
children e43f513583ee
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3:ff0a8cda0c0b 4:fdbd97ff825e
1 <tool id="ensembl_vep" name="Predict variant effects" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@"> 1 <tool id="ensembl_vep" name="Predict variant effects" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@">
2 <description>with VEP</description> 2 <description>with VEP</description>
3 <macros> 3 <macros>
4 <token name="@TOOL_VERSION@">109.3</token> 4 <token name="@TOOL_VERSION@">110.1</token>
5 <token name="@VERSION_SUFFIX@">0</token> 5 <token name="@VERSION_SUFFIX@">0</token>
6 <token name="@DB_VERSION@">108</token> 6 <token name="@DB_VERSION@">108</token>
7 <xml name="vcf_input"> 7 <xml name="vcf_input">
8 <param type="data" name="input1" label="VCF input file" format="vcf"> 8 <param type="data" name="input1" label="VCF input file" format="vcf">
9 <validator type="unspecified_build" /> 9 <validator type="unspecified_build" />
15 </xml> 15 </xml>
16 </macros> 16 </macros>
17 <requirements> 17 <requirements>
18 <requirement type="package" version="@TOOL_VERSION@">ensembl-vep</requirement> 18 <requirement type="package" version="@TOOL_VERSION@">ensembl-vep</requirement>
19 <requirement type="package" version="0.1">perl-math-cdf</requirement> 19 <requirement type="package" version="0.1">perl-math-cdf</requirement>
20 <requirement type="package" version="3.10">grep</requirement> 20 <requirement type="package" version="3.11">grep</requirement>
21 </requirements> 21 </requirements>
22 <command detect_errors="exit_code"><![CDATA[ 22 <command detect_errors="exit_code"><![CDATA[
23 #if $annotation_cache.source == "custom": 23 #if $annotation_cache.source == "custom":
24 #set $custom_ext = $annotation_cache.custom_annotation.ext[:3] 24 #set $custom_ext = $annotation_cache.custom_annotation.ext[:3]
25 set -o pipefail && 25 set -o pipefail &&