Mercurial > repos > iuc > ensembl_vep
diff test-data/test.gtf @ 0:7303183cdb87 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ensembl_vep commit 2db33cd5bcf5e2d7e3a43f11855c4cfc3b1b9f56
| author | iuc |
|---|---|
| date | Wed, 11 May 2022 13:03:38 +0000 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test.gtf Wed May 11 13:03:38 2022 +0000 @@ -0,0 +1,20 @@ +21 havana exon 2770 3326 . - . gene_id "ENSG00000260583"; gene_version "1"; transcript_id "ENST00000567517"; transcript_version "1"; exon_number "1"; gene_name "AP000223.42"; gene_source "havana"; gene_biotype "antisense"; havana_gene "OTTHUMG00000172769"; havana_gene_version "1"; transcript_name "AP000223.42-001"; transcript_source "havana"; transcript_biotype "antisense"; havana_transcript "OTTHUMT00000420390"; havana_transcript_version "1"; exon_id "ENSE00002629631"; exon_version "1"; tag "basic"; transcript_support_level "NA"; +21 havana gene 2770 3326 . - . gene_id "ENSG00000260583"; gene_version "1"; gene_name "AP000223.42"; gene_source "havana"; gene_biotype "antisense"; havana_gene "OTTHUMG00000172769"; havana_gene_version "1"; +21 havana transcript 2770 3326 . - . gene_id "ENSG00000260583"; gene_version "1"; transcript_id "ENST00000567517"; transcript_version "1"; gene_name "AP000223.42"; gene_source "havana"; gene_biotype "antisense"; havana_gene "OTTHUMG00000172769"; havana_gene_version "1"; transcript_name "AP000223.42-001"; transcript_source "havana"; transcript_biotype "antisense"; havana_transcript "OTTHUMT00000420390"; havana_transcript_version "1"; tag "basic"; transcript_support_level "NA"; +21 ensembl_havana three_prime_utr 5656 5706 . - . gene_id "ENSG00000154719"; gene_version "13"; transcript_id "ENST00000352957"; transcript_version "8"; gene_name "MRPL39"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTHUMG00000078371"; havana_gene_version "4"; transcript_name "MRPL39-001"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS13573"; havana_transcript "OTTHUMT00000171194"; havana_transcript_version "1"; tag "basic"; transcript_support_level "1"; +21 ensembl_havana three_prime_utr 5656 5750 . - . gene_id "ENSG00000154719"; gene_version "13"; transcript_id "ENST00000307301"; transcript_version "11"; gene_name "MRPL39"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTHUMG00000078371"; havana_gene_version "4"; transcript_name "MRPL39-002"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS33522"; havana_transcript "OTTHUMT00000171195"; havana_transcript_version "2"; tag "basic"; transcript_support_level "5"; +21 ensembl_havana exon 5656 5754 . - . gene_id "ENSG00000154719"; gene_version "13"; transcript_id "ENST00000307301"; transcript_version "11"; exon_number "11"; gene_name "MRPL39"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTHUMG00000078371"; havana_gene_version "4"; transcript_name "MRPL39-002"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS33522"; havana_transcript "OTTHUMT00000171195"; havana_transcript_version "2"; exon_id "ENSE00003528074"; exon_version "1"; tag "basic"; transcript_support_level "5"; +21 ensembl_havana exon 5656 5754 . - . gene_id "ENSG00000154719"; gene_version "13"; transcript_id "ENST00000352957"; transcript_version "8"; exon_number "10"; gene_name "MRPL39"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTHUMG00000078371"; havana_gene_version "4"; transcript_name "MRPL39-001"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS13573"; havana_transcript "OTTHUMT00000171194"; havana_transcript_version "1"; exon_id "ENSE00003605259"; exon_version "1"; tag "basic"; transcript_support_level "1"; +21 ensembl_havana gene 5656 27517 . - . gene_id "ENSG00000154719"; gene_version "13"; gene_name "MRPL39"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTHUMG00000078371"; havana_gene_version "4"; +21 ensembl_havana transcript 5656 27517 . - . gene_id "ENSG00000154719"; gene_version "13"; transcript_id "ENST00000307301"; transcript_version "11"; gene_name "MRPL39"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTHUMG00000078371"; havana_gene_version "4"; transcript_name "MRPL39-002"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS33522"; havana_transcript "OTTHUMT00000171195"; havana_transcript_version "2"; tag "basic"; transcript_support_level "5"; +21 ensembl_havana transcript 5656 27517 . - . gene_id "ENSG00000154719"; gene_version "13"; transcript_id "ENST00000352957"; transcript_version "8"; gene_name "MRPL39"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTHUMG00000078371"; havana_gene_version "4"; transcript_name "MRPL39-001"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS13573"; havana_transcript "OTTHUMT00000171194"; havana_transcript_version "1"; tag "basic"; transcript_support_level "1"; +21 ensembl_havana stop_codon 5707 5709 . - 0 gene_id "ENSG00000154719"; gene_version "13"; transcript_id "ENST00000352957"; transcript_version "8"; exon_number "10"; gene_name "MRPL39"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTHUMG00000078371"; havana_gene_version "4"; transcript_name "MRPL39-001"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS13573"; havana_transcript "OTTHUMT00000171194"; havana_transcript_version "1"; tag "basic"; transcript_support_level "1"; +21 ensembl_havana CDS 5710 5754 . - 0 gene_id "ENSG00000154719"; gene_version "13"; transcript_id "ENST00000352957"; transcript_version "8"; exon_number "10"; gene_name "MRPL39"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTHUMG00000078371"; havana_gene_version "4"; transcript_name "MRPL39-001"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS13573"; havana_transcript "OTTHUMT00000171194"; havana_transcript_version "1"; protein_id "ENSP00000284967"; protein_version "6"; tag "basic"; transcript_support_level "1"; +21 ensembl_havana stop_codon 5751 5753 . - 0 gene_id "ENSG00000154719"; gene_version "13"; transcript_id "ENST00000307301"; transcript_version "11"; exon_number "11"; gene_name "MRPL39"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTHUMG00000078371"; havana_gene_version "4"; transcript_name "MRPL39-002"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS33522"; havana_transcript "OTTHUMT00000171195"; havana_transcript_version "2"; tag "basic"; transcript_support_level "5"; +21 ensembl_havana CDS 5754 5754 . - 1 gene_id "ENSG00000154719"; gene_version "13"; transcript_id "ENST00000307301"; transcript_version "11"; exon_number "11"; gene_name "MRPL39"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTHUMG00000078371"; havana_gene_version "4"; transcript_name "MRPL39-002"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS33522"; havana_transcript "OTTHUMT00000171195"; havana_transcript_version "2"; protein_id "ENSP00000305682"; protein_version "7"; tag "basic"; transcript_support_level "5"; +21 ensembl_havana CDS 7701 7789 . - 0 gene_id "ENSG00000154719"; gene_version "13"; transcript_id "ENST00000307301"; transcript_version "11"; exon_number "10"; gene_name "MRPL39"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTHUMG00000078371"; havana_gene_version "4"; transcript_name "MRPL39-002"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS33522"; havana_transcript "OTTHUMT00000171195"; havana_transcript_version "2"; protein_id "ENSP00000305682"; protein_version "7"; tag "basic"; transcript_support_level "5"; +21 ensembl_havana exon 7701 7789 . - . gene_id "ENSG00000154719"; gene_version "13"; transcript_id "ENST00000307301"; transcript_version "11"; exon_number "10"; gene_name "MRPL39"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTHUMG00000078371"; havana_gene_version "4"; transcript_name "MRPL39-002"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS33522"; havana_transcript "OTTHUMT00000171195"; havana_transcript_version "2"; exon_id "ENSE00001149457"; exon_version "5"; tag "basic"; transcript_support_level "5"; +21 ensembl_havana CDS 8835 8882 . - 0 gene_id "ENSG00000154719"; gene_version "13"; transcript_id "ENST00000307301"; transcript_version "11"; exon_number "9"; gene_name "MRPL39"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTHUMG00000078371"; havana_gene_version "4"; transcript_name "MRPL39-002"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS33522"; havana_transcript "OTTHUMT00000171195"; havana_transcript_version "2"; protein_id "ENSP00000305682"; protein_version "7"; tag "basic"; transcript_support_level "5"; +21 ensembl_havana CDS 8835 8882 . - 0 gene_id "ENSG00000154719"; gene_version "13"; transcript_id "ENST00000352957"; transcript_version "8"; exon_number "9"; gene_name "MRPL39"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTHUMG00000078371"; havana_gene_version "4"; transcript_name "MRPL39-001"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS13573"; havana_transcript "OTTHUMT00000171194"; havana_transcript_version "1"; protein_id "ENSP00000284967"; protein_version "6"; tag "basic"; transcript_support_level "1"; +21 ensembl_havana exon 8835 8882 . - . gene_id "ENSG00000154719"; gene_version "13"; transcript_id "ENST00000307301"; transcript_version "11"; exon_number "9"; gene_name "MRPL39"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTHUMG00000078371"; havana_gene_version "4"; transcript_name "MRPL39-002"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS33522"; havana_transcript "OTTHUMT00000171195"; havana_transcript_version "2"; exon_id "ENSE00001017286"; exon_version "1"; tag "basic"; transcript_support_level "5"; +21 ensembl_havana exon 8835 8882 . - . gene_id "ENSG00000154719"; gene_version "13"; transcript_id "ENST00000352957"; transcript_version "8"; exon_number "9"; gene_name "MRPL39"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; havana_gene "OTTHUMG00000078371"; havana_gene_version "4"; transcript_name "MRPL39-001"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS13573"; havana_transcript "OTTHUMT00000171194"; havana_transcript_version "1"; exon_id "ENSE00001017286"; exon_version "1"; tag "basic"; transcript_support_level "1";