Mercurial > repos > iuc > extract_genomic_dna

comparison extract_genomic_dna.xml @ 10:5cc8e93ee98f draft default tip

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/extract_genomic_dna commit a656cf7893ea9ce63d0e470c027fc185b5b6d82d"
author iuc
date Fri, 06 Dec 2019 15:24:00 -0500
parents e1f5bdd8279c
children
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9:e1f5bdd8279c 10:5cc8e93ee98f
1 <tool id="Extract genomic DNA 1" name="Extract Genomic DNA" version="3.0.3"> 1 <tool id="Extract genomic DNA 1" name="Extract Genomic DNA" version="3.0.3+galaxy2">
2 <description>using coordinates from assembled/unassembled genomes</description> 2 <description>using coordinates from assembled/unassembled genomes</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="0.7.1">bx-python</requirement> 4 <requirement type="package" version="0.7.1">bx-python</requirement>
5 <requirement type="package" version="1.10.0">six</requirement> 5 <requirement type="package" version="1.13.0">six</requirement>
6 <requirement type="package" version="324">ucsc-fatotwobit</requirement> 6 <requirement type="package" version="377">ucsc-fatotwobit</requirement>
7 </requirements> 7 </requirements>
8 <command detect_errors="exit_code"><![CDATA[ 8 <command detect_errors="exit_code"><![CDATA[
9 #set genome = $input.metadata.dbkey 9 #set genome = $input.metadata.dbkey
10 #set datatype = $input.datatype 10 #set datatype = $input.datatype
11 mkdir -p output_dir && 11 mkdir -p output_dir &&
50 <option value="history">from history</option> 50 <option value="history">from history</option>
51 </param> 51 </param>
52 <when value="cached"> 52 <when value="cached">
53 <param name="reference_genome" type="select" label="Using reference genome"> 53 <param name="reference_genome" type="select" label="Using reference genome">
54 <options from_data_table="twobit"> 54 <options from_data_table="twobit">
55 <filter type="data_meta" key="dbkey" ref="input" column="dbkey"/> 55 <filter type="data_meta" key="dbkey" ref="input" column="value"/>
56 </options> 56 </options>
57 <validator type="no_options" message="A built-in reference genome is not available for the build associated with the selected input file"/> 57 <validator type="no_options" message="A built-in reference genome is not available for the build associated with the selected input file"/>
58 </param> 58 </param>
59 </when> 59 </when>
60 <when value="history"> 60 <when value="history">