Mercurial > repos > iuc > extract_genomic_dna

comparison extract_genomic_dna.py @ 5:c8467246b57e draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/extract_genomic_dna commit 19ea4feff5ccf3744c549b9a67259947a1cb90ba
author iuc
date Sat, 21 Jan 2017 14:41:27 -0500
parents b71579ad576c
children 3088e7e70888
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4:4822a36300fd 5:c8467246b57e
4 4
5 import bx.seq.nib 5 import bx.seq.nib
6 import bx.seq.twobit 6 import bx.seq.twobit
7 from bx.intervals.io import Comment, Header 7 from bx.intervals.io import Comment, Header
8 8
9 import extract_genomic_dna_utils as egdu 9 import extract_genomic_dna_utils as egdu # noqa: I100
10 10
11 parser = argparse.ArgumentParser() 11 parser = argparse.ArgumentParser()
12 parser.add_argument('--input_format', dest='input_format', help="Input dataset format") 12 parser.add_argument('--input_format', dest='input_format', help="Input dataset format")
13 parser.add_argument('--input', dest='input', help="Input dataset") 13 parser.add_argument('--input', dest='input', help="Input dataset")
14 parser.add_argument('--genome', dest='genome', help="Input dataset genome build") 14 parser.add_argument('--genome', dest='genome', help="Input dataset genome build")