Mercurial > repos > iuc > extract_genomic_dna
comparison extract_genomic_dna.py @ 8:e400dcbc60d0 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/extract_genomic_dna commit cb490a0eee9efc2cd6c98d5bb714b75b5894c56c
author | iuc |
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date | Mon, 06 Nov 2017 23:20:04 -0500 |
parents | 3088e7e70888 |
children |
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7:3088e7e70888 | 8:e400dcbc60d0 |
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6 | 6 |
7 import bx.seq.nib | 7 import bx.seq.nib |
8 import bx.seq.twobit | 8 import bx.seq.twobit |
9 from bx.intervals.io import Comment, Header | 9 from bx.intervals.io import Comment, Header |
10 | 10 |
11 import extract_genomic_dna_utils as egdu # noqa: I100 | 11 import extract_genomic_dna_utils as egdu # noqa: I100,I202 |
12 | 12 |
13 parser = argparse.ArgumentParser() | 13 parser = argparse.ArgumentParser() |
14 parser.add_argument('--input_format', dest='input_format', help="Input dataset format") | 14 parser.add_argument('--input_format', dest='input_format', help="Input dataset format") |
15 parser.add_argument('--input', dest='input', help="Input dataset") | 15 parser.add_argument('--input', dest='input', help="Input dataset") |
16 parser.add_argument('--genome', dest='genome', help="Input dataset genome build") | 16 parser.add_argument('--genome', dest='genome', help="Input dataset genome build") |