Mercurial > repos > iuc > extract_genomic_dna

diff test-data/extract_genomic_dna_out1.fasta @ 2:702970e4a134 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/extract_genomic_dna commit 9192c1e90e2fd5017e6044884bcc6f2e80ba8b31
author iuc
date Wed, 09 Mar 2016 05:07:21 -0500
parents 8dd8e89c0603
children
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--- a/test-data/extract_genomic_dna_out1.fasta	Wed Jan 20 09:49:37 2016 -0500
+++ b/test-data/extract_genomic_dna_out1.fasta	Wed Mar 09 05:07:21 2016 -0500
@@ -1,88 +1,20 @@
->hg17_chr1_147962192_147962580_-
-ACTTGATCCTGCTCCCTCGGTGTCTGCATTGACTCCTCATGCTGGGACTG
-GACCCGTCAACCCCCCTGCTCGCTGCTCACGTACCTTCATCACTTTTAGT
-GATGATGCAACTTTCGAGGAATGGTTCCCCCAAGGGCGGCCCCCAAAAGT
-CCCTGTTCGTGAGGTCTGTCCAGTGACCCATCGTCCAGCCCTATACCGGG
-ACCCTGTTACAGACATACCCTATGCCACTGCTCGAGCCTTCAAGATCATT
-CGTGAGGCTTACAAGAAGTACATTACTGCCCATGGACTGCCGCCCACTGC
-CTCAGCCCTGGGCCCCGGCCCGCCACCTCCTGAGCCCCTCCCTGGCTCTG
-GGCCCCGAGCCTTGCGCCAGAAAATTGTCATTAAATGA
->hg17_chr1_147984545_147984630_+
-ATGGCGTCGGCCTCCTCCGGGCCGTCGTCTTCGGTCGGTTTTTCATCCTT
-TGATCCCGCGGTCCCTTCCTGTACCTTGTCCTCAG
->hg17_chr1_148078400_148078582_-
-GTTCTCAGCTTCCTTGCTTCCATGGCTCCAGCACCATTCGAAACCTCAAA
-GAGAGGTTCCACATGAGCATGACTGAGGAGCAGCTGCAGCTGCTGGTGGA
-GCAGATGGTGGATGGCAGTATGCGGTCTATCACCACCAAACTCTATGACG
-GCTTCCAGTACCTCACCAACGGCATCATGTGA
->hg17_chr1_148185136_148185276_+
-ATGGAAGCGTTTTTGGGGTCGCGGTCCGGACTTTGGGCGGGGGGTCCGGC
-CCCAGGACAGTTTTACCGCATTCCGTCCACTCCCGATTCCTTCATGGATC
-CGGCGTCTGCACTTTACAGAGGTCCAATCACGCGGACCCA
->hg17_chr10_55251623_55253124_-
-TCTTTTCCTTCTCTACCATTTTCAACAAAGCAGGGGAAATAACTCAGTCT
-CAGAAGACAGGAAACATCAACAAGTTGTGATGCCCTTTTCTTCCAATACT
-ATTGAGGCTCACAAGTCAGCTCATGTAGACGGATCACTTAAGAGCAACAA
-ACTGAAGTCTGCAAGAAAATTCACATTTCTATCTGATGAGGATGACTTAA
-GTGCCCATAATCCCCTTTATAAGGAAAACATAAGTCAAGTATCAACAAAT
-TCAGACATTTCACAGAGAACAGATTTTGTAGACCCATTTTCACCCAAAAT
-ACAAGCCAAGAGTAAGTCTCTGAGGGGCCCAAGAGAAAAGATTCAGAGGC
-TGTGGAGTCAGTCAGTCAGCTTACCCAGGAGGCTGATGAGGAAAGTTCCA
-AATAGACCAGAGATCATAGATCTGCAGCAGTGGCAAGGCACCAGGCAGAA
-AGCTGAAAATGAAAACACTGGAATCTGTACAAACAAAAGAGGTAGCAGCA
-ATCCATTGCTTACAACTGAAGAGGCAAATTTGACAGAGAAAGAGGAAATA
-AGGCAAGGTGAAACACTGATGATAGAAGGAACAGAACAGTTGAAATCTCT
-CTCTTCAGACTCTTCATTTTGCTTTCCCAGGCCTCACTTCTCATTCTCCA
-CTTTGCCAACTGTTTCAAGAACTGTGGAACTCAAATCAGAACCTAATGTC
-ATCAGTTCTCCTGCTGAGTGTTCCTTGGAACTTTCTCCTTCAAGGCCTTG
-TGTTTTACATTCTTCACTCTCTAGGAGAGAGACACCTATTTGTATGTTAC
-CTATTGAAACCGAAAGAAATATTTTTGAAAATTTTGCCCATCCACCAAAC
-ATCTCTCCTTCTGCCTGtccccttccccctcctcctcctatttctcctcc
-ttctcctcctcctgctcctgctcctcttgctcctcctcctgacatttctc
-ctttttctcttttttgtcctcctccctctcctccttctatccctcttcct
-cttcctcctcctACATTTTTTCCACTTTCCGTTTCAACGTCTGGTCCCCC
-AACAccacctcttctacctccatttccaactcctcttcctccaccacctc
-cttctattccttgccctccacctccttcAGCTTCATTTCTGTCCACAGAG
-TGTGTCTGTATAACAGGTGTTAAATGCACGACCAACTTGATGCCTGCCGA
-GAAAATTAAGTCCTCTATGACACAGCTATCAACAACGACAGTGTGTAAAA
-CAGACCCTCAGAGAGAACCAAAAGGCATCCTCAGACACGTTAAAAACTTA
-GCAGAACTTGAAAAATCAGTAGCTAACATGTACAGTCAAATAGAAAAAAA
-CTATCTACGCACAAATGTTTCAGAACTTCAAACTATGTGCCCTTCAGAAG
-TAACAAATATGGAAATCACATCTGAACAAAACAAGGGGAGTTTGAACAAT
-ATTGTCGAGGGAACTGAAAAACAATCTCACAGTCAATCTACTTCACTGTA
-A
->hg17_chr11_116124407_116124501_-
-ATCCAATGGATTTGAACAGAAGCGCTTTGCCAGGCTTGCCAGCAAGAAGG
-CAGTGGAGGAACTTGCCTACAAATGGAGTGTTGAGGATATGTAA
->hg17_chr11_116206508_116206563_+
-ATGCAGCCCCGGGTACTCCTTGTTGTTGCCCTCCTGGCGCTCCTGGCCTC
-TGCCC
->hg17_chr11_116211733_116212337_-
-CCTAAAGCTCCTTGACAACTGGGACAGCGTGACCTCCACCTTCAGCAAGC
-TGCGCGAACAGCTCGGCCCTGTGACCCAGGAGTTCTGGGATAACCTGGAA
-AAGGAGACAGAGGGCCTGAGGCAGGAGATGAGCAAGGATCTGGAGGAGGT
-GAAGGCCAAGGTGCAGCCCTACCTGGACGACTTCCAGAAGAAGTGGCAGG
-AGGAGATGGAGCTCTACCGCCAGAAGGTGGAGCCGCTGCGCGCAGAGCTC
-CAAGAGGGCGCGCGCCAGAAGCTGCACGAGCTGCAAGAGAAGCTGAGCCC
-ACTGGGCGAGGAGATGCGCGACCGCGCGCGCGCCCATGTGGACGCGCTGC
-GCACGCATCTGGCCCCCTACAGCGACGAGCTGCGCCAGCGCTTGGCCGCG
-CGCCTTGAGGCTCTCAAGGAGAACGGCGGCGCCAGACTGGCCGAGTACCA
-CGCCAAGGCCACCGAGCATCTGAGCACGCTCAGCGAGAAGGCCAAGCCCG
-CGCTCGAGGACCTCCGCCAAGGCCTGCTGCCCGTGCTGGAGAGCTTCAAG
-GTCAGCTTCCTGAGCGCTCTCGAGGAGTACACTAAGAAGCTCAACACCCA
-GTGA
->hg17_chr11_1812377_1812407_+
-ATGCTCCACCTGCATGGCTGGCAAACCATG
->hg17_chr12_38440094_38440321_-
-GAGCTTTCTTCCTCTATGCTGGATTTGCTGCTGTGGGACTCCTTTTCATC
-TATGGCTGTCTTCCTGAGACCAAAGGCAAAAAATTAGAGGAAATTGAATC
-ACTCTTTGACAACAGGCTATGTACATGTGGCACTTCAGATTCTGATGAAG
-GGAGATATATTGAATATATTCGGGTAAAGGGAAGTAACTATCATCTTTCT
-GACAATGATGCTTCTGATGTGGAATAA
->hg17_chr13_112381694_112381953_+
-ATGAACTCACCAGAGGCGAGGCTCTGCGTTGCTCAATGCAGAGACTCTTA
-CCCAGGGTGTCAGCCTCTGAAAGATACACGTGCCTGGGCCTCTTCCCTGA
-AGATGGACCCGGCAGGTCTGGAGGGAGGCCCCCGTGATGAATCCCGTGAT
-GAGCCGCCGATCCGAGCTCAGGCTGCGTCATGGGACCAGCCACAAGGTTG
-CCTGACCTATAAAGGTCGCAGGAGTGCCTCAGGGACACAGAAGCAGTTAC
-AGCTGCCAG
+>mm9~test_chromosome~53~550~+
+TACTATCTGACTAGACTGGAGGCGCTTGCGACTGAGCTAGGACGTGCCAC
+TACGGGGATGACGACTAGGACTACGGACGGACTTAGAGCGTCAGATGCAG
+CGACTGGACTATTTAGGACGATCGGACTGAGGAGGGCAGTAGGACGCTAC
+GTATTTGGCGCGCGGCGCTACGGCTGAGCGTCGAGCTTGCGATACGCCGT
+AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
+AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAC
+TATTACTTTATTATCTTACTCGGACGTAGACGGATCGGCAACGGGACTGT
+AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
+AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGTT
+TTCTACTTGAGACTGGGATCGAGGCGGACTTTTTAGGACGGGACTTGC
+>mm9~test_chromosome~53~250~+
+TACTATCTGACTAGACTGGAGGCGCTTGCGACTGAGCTAGGACGTGCCAC
+TACGGGGATGACGACTAGGACTACGGACGGACTTAGAGCGTCAGATGCAG
+CGACTGGACTATTTAGGACGATCGGACTGAGGAGGGCAGTAGGACGCTAC
+GTATTTGGCGCGCGGCGCTACGGCTGAGCGTCGAGCTTGCGATACGCC
+>mm9~test_chromosome~351~400~+
+ACTATTACTTTATTATCTTACTCGGACGTAGACGGATCGGCAACGGGACT
+>mm9~test_chromosome~501~550~+
+TTTTCTACTTGAGACTGGGATCGAGGCGGACTTTTTAGGACGGGACTTGC