Mercurial > repos > iuc > extract_genomic_dna

changeset 10:5cc8e93ee98f draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/extract_genomic_dna commit a656cf7893ea9ce63d0e470c027fc185b5b6d82d"
author iuc
date Fri, 06 Dec 2019 15:24:00 -0500
parents e1f5bdd8279c
children 80414c33a59a
files extract_genomic_dna.xml tool_data_table_conf.xml.sample
diffstat 2 files changed, 5 insertions(+), 5 deletions(-) [+]
line wrap: on
line diff
--- a/extract_genomic_dna.xml	Thu Oct 17 03:00:47 2019 -0400
+++ b/extract_genomic_dna.xml	Fri Dec 06 15:24:00 2019 -0500
@@ -1,9 +1,9 @@
-<tool id="Extract genomic DNA 1" name="Extract Genomic DNA" version="3.0.3">
+<tool id="Extract genomic DNA 1" name="Extract Genomic DNA" version="3.0.3+galaxy2">
     <description>using coordinates from assembled/unassembled genomes</description>
     <requirements>
         <requirement type="package" version="0.7.1">bx-python</requirement>
-        <requirement type="package" version="1.10.0">six</requirement>
-        <requirement type="package" version="324">ucsc-fatotwobit</requirement>
+        <requirement type="package" version="1.13.0">six</requirement>
+        <requirement type="package" version="377">ucsc-fatotwobit</requirement>
     </requirements>
     <command detect_errors="exit_code"><![CDATA[
 #set genome = $input.metadata.dbkey
@@ -52,7 +52,7 @@
             <when value="cached">
                 <param name="reference_genome" type="select" label="Using reference genome">
                     <options from_data_table="twobit">
-                        <filter type="data_meta" key="dbkey" ref="input" column="dbkey"/>
+                        <filter type="data_meta" key="dbkey" ref="input" column="value"/>
                     </options>
                     <validator type="no_options" message="A built-in reference genome is not available for the build associated with the selected input file"/>
                 </param>
--- a/tool_data_table_conf.xml.sample	Thu Oct 17 03:00:47 2019 -0400
+++ b/tool_data_table_conf.xml.sample	Fri Dec 06 15:24:00 2019 -0500
@@ -1,6 +1,6 @@
 <tables>
     <table name="twobit" comment_char="#" allow_duplicate_entries="False">
-        <columns>dbkey, value</columns>
+        <columns>value, path</columns>
         <file path="tool-data/twobit.loc" />
     </table>
 </tables>