Mercurial > repos > iuc > extract_metaphlan_database

comparison generate_test_data.sh @ 0:5b2f8b6a3609 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan/ commit 1e543a44ceffd8e4c5537b9015606ab3b90a114c"
author iuc
date Mon, 19 Apr 2021 20:55:20 +0000
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-1:000000000000 0:5b2f8b6a3609
1 #/usr/bin/env bash
2
3 metaphlan_hclust_heatmap.py \
4 --in test-data/merged_community_profile.tabular \
5 --out test-data/heatmap.png \
6 -m 'average' \
7 -d 'braycurtis' \
8 -f 'correlation' \
9 --minv '0' \
10 --tax_lev 'a' \
11 --sdend_h '0.1' \
12 --fdend_w '0.1' \
13 --cm_h '0.03' \
14 --font_size '7' \
15 --clust_line_w '1' \
16 --perc '90' \
17 -c 'jet'
18
19 metaphlan_hclust_heatmap.py \
20 --in test-data/merged_community_profile.tabular \
21 --out test-data/heatmap.pdf \
22 -m 'ward' \
23 -d 'euclidean' \
24 -f 'euclidean' \
25 --minv '0' \
26 --tax_lev 'a' \
27 --sdend_h '0.1' \
28 --fdend_w '0.1' \
29 --cm_h '0.03' \
30 --font_size '7' \
31 --clust_line_w '1' \
32 --perc '90' \
33 -c 'pink'
34
35 metaphlan_hclust_heatmap.py \
36 --in test-data/merged_community_profile.tabular \
37 --out test-data/heatmap.svg \
38 -m 'complete' \
39 -d 'hamming' \
40 -f 'matching' \
41 --minv '0' \
42 --tax_lev 'a' \
43 --sdend_h '0.1' \
44 --fdend_w '0.1' \
45 --cm_h '0.03' \
46 --font_size '7' \
47 --clust_line_w '1' \
48 --perc '90' \
49 -c 'pink'