Mercurial > repos > iuc > extract_metaphlan_database

diff macros.xml @ 0:5b2f8b6a3609 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan/ commit 1e543a44ceffd8e4c5537b9015606ab3b90a114c"
author iuc
date Mon, 19 Apr 2021 20:55:20 +0000
parents
children 1aaa9b943a83
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/macros.xml	Mon Apr 19 20:55:20 2021 +0000
@@ -0,0 +1,40 @@
+<?xml version="1.0"?>
+<macros>
+    <token name="@TOOL_VERSION@">3.0.7</token>
+    <token name="@VERSION_SUFFIX@">0</token>
+    <token name="@PROFILE@">20.01</token>
+    <xml name="edam_ontology">
+        <edam_topics>
+            <edam_topic>topic_3174</edam_topic>
+            <edam_topic>topic_0194</edam_topic>
+        </edam_topics>
+        <edam_operations>
+            <edam_operation>operation_2478</edam_operation>
+            <edam_operation>operation_0324</edam_operation>
+        </edam_operations>
+    </xml>
+    <xml name="requirements">
+        <requirements>
+            <requirement type="package" version="@TOOL_VERSION@">metaphlan</requirement>
+            <yield/>
+        </requirements>
+    </xml>
+    <xml name="citations">
+        <citations>
+            <citation type="doi">1101/2020.11.19.388223</citation>
+        </citations>
+    </xml>
+    <token name="@FILE_FORMATS@">fastq,fastq.gz,fastq.bz2,fasta,fasta.gz,fasta.bz2</token>
+    <xml name="tax_lev">
+        <param argument="--tax_lev" type="select" label="Taxonomic level for the relative abundance output">
+            <option value="a" selected="true">All taxonomic levels</option>
+            <option value="k">Kingdoms only</option>
+            <option value="p">Phyla only</option>
+            <option value="c">Classes only</option>
+            <option value="o">Orders only</option>
+            <option value="f">Families only</option>
+            <option value="g">Genera only</option>
+            <option value="s">Species only</option>
+        </param>
+    </xml>
+</macros>