Mercurial > repos > iuc > extract_metaphlan_database
diff formatoutput.py @ 2:b6ecdfac241f draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan/ commit f1c6f4fe1e572ace84cf9106bc253603f55aac55"
author | iuc |
---|---|
date | Mon, 14 Jun 2021 12:47:06 +0000 |
parents | 1aaa9b943a83 |
children | b4c750fe0fe3 |
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--- a/formatoutput.py Mon May 17 20:08:58 2021 +0000 +++ b/formatoutput.py Mon Jun 14 12:47:06 2021 +0000 @@ -57,7 +57,9 @@ # skip headers if line.startswith("#"): continue - + # skip UNKNOWN lines in Predicted taxon relative abundances + if "UNKNOWN" in line: + continue # spit lines split_line = line[:-1].split('\t') taxo_n = split_line[0].split('|')