Mercurial > repos > iuc > extract_metaphlan_database
view generate_test_data.sh @ 7:2e38deed28ee draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan/ commit 42f32d4c093fc3b8d2604c635e1f862fee695a05
author | iuc |
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date | Wed, 29 Mar 2023 07:59:44 +0000 |
parents | 5b2f8b6a3609 |
children |
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#/usr/bin/env bash metaphlan_hclust_heatmap.py \ --in test-data/merged_community_profile.tabular \ --out test-data/heatmap.png \ -m 'average' \ -d 'braycurtis' \ -f 'correlation' \ --minv '0' \ --tax_lev 'a' \ --sdend_h '0.1' \ --fdend_w '0.1' \ --cm_h '0.03' \ --font_size '7' \ --clust_line_w '1' \ --perc '90' \ -c 'jet' metaphlan_hclust_heatmap.py \ --in test-data/merged_community_profile.tabular \ --out test-data/heatmap.pdf \ -m 'ward' \ -d 'euclidean' \ -f 'euclidean' \ --minv '0' \ --tax_lev 'a' \ --sdend_h '0.1' \ --fdend_w '0.1' \ --cm_h '0.03' \ --font_size '7' \ --clust_line_w '1' \ --perc '90' \ -c 'pink' metaphlan_hclust_heatmap.py \ --in test-data/merged_community_profile.tabular \ --out test-data/heatmap.svg \ -m 'complete' \ -d 'hamming' \ -f 'matching' \ --minv '0' \ --tax_lev 'a' \ --sdend_h '0.1' \ --fdend_w '0.1' \ --cm_h '0.03' \ --font_size '7' \ --clust_line_w '1' \ --perc '90' \ -c 'pink'