# HG changeset patch
# User iuc
# Date 1643839332 0
# Node ID 97ad0d817a453fdda14f5251bdfdb6c7e1001ff0
# Parent  c11805a111eadcfe329efb1a46a6c5396adc34a9
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan/ commit 2cec4cbdc43f84720af3e22eb008e9788481ce00"

diff -r c11805a111ea -r 97ad0d817a45 macros.xml
--- a/macros.xml	Fri Sep 24 07:22:56 2021 +0000
+++ b/macros.xml	Wed Feb 02 22:02:12 2022 +0000
@@ -1,6 +1,6 @@
 <?xml version="1.0"?>
 <macros>
-    <token name="@TOOL_VERSION@">3.0.13</token>
+    <token name="@TOOL_VERSION@">3.0.14</token>
     <token name="@VERSION_SUFFIX@">0</token>
     <token name="@PROFILE@">20.01</token>
     <xml name="edam_ontology">
diff -r c11805a111ea -r 97ad0d817a45 test-data/SRS014464-Anterior_nares-abundances.tabular
--- a/test-data/SRS014464-Anterior_nares-abundances.tabular	Fri Sep 24 07:22:56 2021 +0000
+++ b/test-data/SRS014464-Anterior_nares-abundances.tabular	Wed Feb 02 22:02:12 2022 +0000
@@ -1,4 +1,5 @@
 #custom_db
+#mpa_v21_CHOCOPhlAnxxx_2
 #/home/bebatut/miniconda3/envs/mulled-v1-b4915a464cf72db4053ec566c65e3f5f431691323f08f9b6b1c9ecfc4f8b9c88/bin/metaphlan in --input_type fasta --read_min_len 70 --bowtie2db ref_db/ --index custom_db --bt2_ps very-sensitive --min_mapq_val 5 -t rel_ab --tax_lev a --min_cu_len 2000 --add_viruses --stat_q 0.2 --perc_nonzero 0.33 --avoid_disqm --sample_id_key SampleID --sample_id Metaphlan_Analysis -o /tmp/tmptu3575j7/files/000/dataset_19.dat --bowtie2out bowtie2out -s /tmp/tmptu3575j7/files/000/dataset_21.dat --biom /tmp/tmptu3575j7/files/000/dataset_22.dat --nproc 1
 #SampleID	Metaphlan_Analysis
 #clade_name	NCBI_tax_id	relative_abundance	additional_species