Mercurial > repos > iuc > fargene
comparison test-data/class_b1_b2.fasta @ 0:6f743c615c41 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fargene commit 867e4a6fad4c2622ad69517e2d4d9ba185109b72"
author | iuc |
---|---|
date | Thu, 28 Nov 2019 14:39:41 -0500 |
parents | |
children |
comparison
equal
deleted
inserted
replaced
-1:000000000000 | 0:6f743c615c41 |
---|---|
1 >gi|560552|gb|AAB30289.1| IMP-1 [Serratia marcescens] | |
2 MSKLSVFFIFLFCSIATAAESLPDLKIEKLDEGVYVHTSFEEVNGWGVVPKHGLVVLVNAEAYLIDTPFT | |
3 AKDTEKLVTWFVERGYKIKGSISSHFHSDSTGGIEWLNSRSIPTYASELTNELLKKDGKVQATNSFSGVN | |
4 YWLVKNKIEVFYPGPGHTPDNVVVWLPERKILFGGCFIKPYGLGNLGDANIEAWPKSAKLLKSKYGKAKL | |
5 VVPSHSEVGDASLLKLTLEQAVKGLNESKKPSKPSN | |
6 >gi|5420399|emb|CAB46686.1| VIM-1 [Pseudomonas aeruginosa] | |
7 MLKVISSLLVYMTASVMAVASPLAHSGEPSGEYPTVNEIPVGEVRLYQIADGVWSHIATQSFDGAVYPSN | |
8 GLIVRDGDELLLIDTAWGAKNTAALLAEIEKQIGLPVTRAVSTHFHDDRVGGVDVLRAAGVATYASPSTR | |
9 RLAEAEGNEIPTHSLEGLSSSGDAVRFGPVELFYPGAAHSTDNLVVYVPSANVLYGGCAVHELSSTSAGN | |
10 VADADLAEWPTSVERIQKHYPEAEVVIPGHGLPGGLDLLQHTANVVKAHKNRSVAE | |
11 >gi|255031063|emb|CAZ39946.1| NDM-1 [Klebsiella pneumoniae] | |
12 MELPNIMHPVAKLSTALAAALMLSGCMPGEIRPTIGQQMETGDQRFGDLVFRQLAPNVWQHTSYLDMPGF | |
13 GAVASNGLIVRDGGRVLVVDTAWTDDQTAQILNWIKQEINLPVALAVVTHAHQDKMGGMDALHAAGIATY | |
14 ANALSNQLAPQEGMVAAQHSLTFAANGWVEPATAPNFGPLKVFYPGPGHTSDNITVGIDGTDIAFGGCLI | |
15 KDSKAKSLGNLGDADTEHYAASARAFGAAFPKASMIVMSHSAPDSRAAITHTARMADKLR | |
16 >gi|24528423|emb|CAD37801.1| SPM-1 [Pseudomonas aeruginosa] | |
17 MNSPKSRALLGFMGAFCLLLVAGAPLSAKSSDHVDLPYNLTATKIDSDVFVVTDRDFYSSNVLVAKMLDG | |
18 TVVIVSSPFENLGTQTLMDWVAKTMKPKKVVAINTHFHLDGTGGNEIYKKMGAETWSSDLTKQLRLEENK | |
19 KDRIKAAEFYKNEDLKRRILSSHPVPADNVFDLKQGKVFSFSNELVEVSFPGPAHSPDNVVVYFPKKKLL | |
20 FGGCMIKPKELGYLGDANVKAWPDSARRLKKFDAKIVIPGHGEWGGPEMVNKTIKVAEKAVGEMRL | |
21 >gi|42516779|emb|CAF05908.1| GIM-1 [Pseudomonas aeruginosa] | |
22 MKNVLVFLILLVALPALAQGHKPLEVIKIEDGVYLHTSFKNIEGYGLVDSNGLVVLDNNQAYIIDTPWSE | |
23 EDTKLLLSWATDRGYQVMASISTHSHEDRTAGIKLLNSKSIPTYTSELTKKLLAREGKPVPTHYFKDDEF | |
24 TLGNGLIELYYPGAGHTEDNIVAWLPKSKILFGGCLVRSHEWEGLGYVGDASISSWADSIKNIVSKKYPI | |
25 QMVVPGHGKVGSSDILDHTIDLAESASNKLMQPTAEASAD | |
26 >gi|62199049|gb|AAX76774.1| SIM-1 [Acinetobacter pittii] | |
27 MRTLLILCLFGTLNTAFAEEAQPDLKIEKIEEGIYLHTSFQEYKGFGIVKKQGLVVLDNHKAYLIDTPAS | |
28 AGDTEKLVNWLEKNDFTVNGSISTHFHDDSTAGIEWLNTKSIPTYASKLTNELLNKNGKTQAKHSFDKES | |
29 FWLVKNKIEIFYPGPGHTQDNEVVWIPNKKILFGGCFIKPNGLGNLSDANLEAWPGSAKKMISKYSKAKL | |
30 VIPSHSEIGDASLLKLTWEQAIKGLNESKSKPPLIN | |
31 >gi|222053115|dbj|BAH16555.1| KHM-1 [Citrobacter freundii] | |
32 MKIALVISFGLLLFTNMVCADDSLPELDIQKIEDGVYLYTAYEKIEGWGLVGSNGLVVLDNKNAYLIDTP | |
33 ISATDTEKLVKWIDAQGFTAKASISTHFHTDSTGGIAFLNSKSIPTYASKLTNQLLKNKGEEQATHSFGK | |
34 NPYWLLKNKIEAFYPGAGHTPDNLVVWLPKQKILFGGCFVKPEGLGNLSHAVIAEWPASAEKLIARYSNA | |
35 TMVVPGHGKVGDASLLEKTRQRAVEALAAKK | |
36 >gi|291278192|gb|ADD91577.1| DIM-1 [Pseudomonas stutzeri] | |
37 MRTHFTALLLLFSLSSLANDEVPELRIEKVKENIFLHTSYSRVNGFGLVSSNGLVVIDKGNAFIVDTPWS | |
38 DRDTETLVHWIRKNGYELLGSVSTHWHEDRTAGIKWLNDQSISTYATTSTNHLLKENKKEPAKYTLKGNE | |
39 STLVDGLIEVFYPGGGHTIDNVVVWLPKSKILFGGCFVRSLDSEGLGYTGEAHIDQWSRSAQNALSRYSE | |
40 AQIVIPGHGKIGDIALLKHTKSLAETASNKSIQPNANASAD | |
41 >gi|142604|gb|AAA22276.1| BcII pre-beta-lactamase II (EC 3.5.2.6) [Bacillus cereus] | |
42 MKKNTLLKVGLCVGLLGTIQFVSTISSVQASQKVEKTVIKNETGTISISQLNKNVWVHTELGSFNGEAVP | |
43 SNGLVLNTSKGLVLVDSSWDDKLTKELIEMVEKKFQKRVTDVIITHAHADRIGGIKTLKERGIKAHSTAL | |
44 TAELAKKNGYEEPLGDLQTVTNLKFGNMKVETFYPGKGHTEDNIVVWLPQYNILVGGCLVKSTSAKDLGN | |
45 VADAYVNEWSTSIENVLKRYRNINAVVPGHGEVGDKGLLLHTLDLLK | |
46 >gi|143932|gb|AAA22904.1| CcrA beta-lactamase [Bacteroides fragilis] | |
47 MKTVFILISMLFPVAVMAQKSVKISDDISITQLSDKVYTYVSLAEIEGWGMVPSNGMIVINNHQAALLDT | |
48 PINDAQTEMLVNWVTDSLHAKVTTFIPNHWHGDCIGGLGYLQRKGVQSYANQMTIDLAKEKGLPVPEHGF | |
49 TDSLTVSLDGMPLQCYYLGGGHATDNIVVWLPTENILFGGCMLKDNQATSIGNISDADVTAWPKTLDKVK | |
50 AKFPSARYVVPGHGDYGGTELIEHTKQIVNQYIESTSKP | |
51 >gi|9587056|gb|AAF89154.1|AF189298_1 BlaB-1 [Elizabethkingia meningoseptica] | |
52 MLKKIKISLILALGLTSLQAFGQENPDVKIEKLKDNLYVYTTYNTFNGTKYAANAVYLVTDKGVVVIDCP | |
53 WGEDKFKSFTDEIYKKHGKKVIMNIATHSHDDRAGGLEYFGKIGAKTYSTKMTDSILAKENKPRAQYTFD | |
54 NNKSFKVGKSEFQVYYPGKGHTADNVVVWFPKEKVLVGGCIIKSADSKDLGYIGEAYVNDWTQSVHNIQQ | |
55 KFSGAQYVVAGHDDWKDQRSIQHTLDLINEYQQKQKASN | |
56 >gi|318066561|emb|CBY88906.1| TMB-1 [Achromobacter sp. sallbros1] | |
57 MRPFLFLIIFISHFAFANEEIPGLEVEEIDNGVFLHKSYSRVEGWGLVSSNGLVVISGGKAFIIDTPWSE | |
58 SDTEKLVDWIRSKKYELAGSISTHSHEDKTAGIKWLNGKSITTYASALTNEILKREGKEQARSSFKGNEF | |
59 SLMDGFLEVYYPGGGHTIDNLVVWIPSSKILYGGCFIRSLESSGLGYTGEAKIDQWPQSARNTISKYPEA | |
60 KIVVPGHGKIGDFELLKHTKVLAEKASNKANHGDR | |
61 >gi|410825529|gb|AFV91534.1| FIM-1 (possible acquired)[Pseudomonas aeruginosa] | |
62 MRPLPHSYLKSLVICLLTAFAALTPVVNSGVQAAQPKDVPVTFTAITQGVWMHTSMKHMENWGHVPSNGL | |
63 IVEKGDFSILVDTAWDDPQTAQIIEWSKDTLKKPIRWAVFTHAHDDKMGGVAALRQQGIVTYAAADSNRM | |
64 APQNGLTPAEHDLIFDSEHSTSVLHPLVIFDPGPGHTRDNIVVGLPEQGIVFGGCLIRPSGSTSLGNTAD | |
65 ADLAHWKTAVLAVAQRFAEAQQIIPSHGPMAGRELFELTAQLAEKASIPSTP | |
66 >gi|23451048|gb|AAN32638.1|AF416700_1 EBR-1 [Empedobacter brevis] | |
67 MKKLFSLIALIGSFAFGQIKPIQIDPINNNLFVYQTFNSFNGVEYNANGMYLVTNKGIVLFDVPWQKSQY | |
68 QELNDMLQEKYNLPVIAVFATHSHDDRAGDLSFYNELNIPTYATSLTNSKLKKEGKATSKFEIELGKTYK | |
69 FGNEKFVFEYFGEGHTSDNVVVWFPKYKVLNGGCLIKGADAVNLGYTGEANVVEWPKTVHKLVAKHPTIK | |
70 QVIPGHDNWKATGHIENTFKLLEKK | |
71 >gi|19879250|gb|AAK38324.1| JOHN-1 [Flavobacterium johnsoniae UW101] | |
72 MRKLASIILFLAAVSNSLGQSKNSPLQISHLTGDFYVYRTFNDYKGTKISANAMYVVTDKGVVLFDAPWD | |
73 KTQFQPLLDSIKAKHNKEVVMLFGTHSHEDRAGGFDFYKKKGIKTYSIKLTDDILKKNKEPRAEFIISND | |
74 TTFTVGNHTFEVYYPGKGHAPDNIVAWFKKEKILYGGCFVKSAEALDLGYLGDADVKEWQKSIKKVQAKF | |
75 KKPDYIISGHDDWTSKESLNHTLKLVDEYLAQKSAGKK | |
76 >gi|18001153|gb|AAL55263.1|AF339734_1 CGB-1 [Chryseobacterium gleum] | |
77 MKKSIPFFIISMLLSPLANAQDTQVRDFVIEPQIQPNFYIYKTFGVFGGKEYSTNAVYLVTKKGVVLFDV | |
78 PWQKTQYQSLMDTIQKRHHLPVIAVFATHSHEDRAGDLSFYNKKGIKTYATAKTNEILKKEGKATSTEII | |
79 KTGKPYRIGGEEFVVDFLGEGHTADNVVVWFPKYKILDGGCLVKSKAAADLGYTGEANVAQWPKTMEKLK | |
80 SKYAQATLIIPGHDEWKGGGHVEHTLDLLNKK | |
81 >gi|24637303|gb|AAN63647.1|AF441286_1 MUS-1 [Myroides odoratimimus] | |
82 MHRILSVITMLICTTLVHAQSDKLKIKQLNDNMYIYTTYQEFQGVTYSSNSMYVLTDEGVILIDTPWDKD | |
83 QYEPLLEYIRSNHNKEVKWVITTHFHEDRSGGLGYFNSIGAQTYTYALTNEILKERNEPQAQHSFNKEKQ | |
84 FTFGNEKLAVYFLGEGHSLDNTVVWFPKEEVLYGGCLIKSAEATTIGNIADGNVIAWPKTIEAVKQKFKN | |
85 AKVIIPGHDEWDMTGHIENTERILSAYNQQHSTKND | |
86 >MYO-1 | |
87 MKILLAFFLLSSLTFISCKESSSNHNQANQENKKEIINKPLTDSLIVYQTENLIINKLSNHIYEHISFLNTDDFGKVACNGMLVLNENKVVVFDTPTDDKSSLELINFVTNTLKSEIIGLIPTHFHDDCIGGITEFENHNIQTYVSKETIELLKDNGQEFSNPTKDFDNSLTLDIGNKKVYAEYFGEGHTKDNVVGYFPEDNAVFGGCLIKEIDASKGYLGDANIKEWSTTVEKVKLKYPNAKIVIPGHGKWGGIELFDYTIKLFE | |
88 >SHD-1 | |
89 MMLNLVRKVFTTGPRVLSVVSLLSVNVLGINLAQAVTSEESVPKFSIEPLANNVYLHQSFQQTESFGLVGANGLVVINEGKAFIVDTPWSESDTAVLVDWIKEQGYQLVGSVSTHSHEDRTAGIGWLNAHSIPTFASELTNQILKESEKPLASHPFALPQASLFDGQLEAFYPGGGHALDNLVVWLPKSNILFGGCLVRSLDSTSLGYTGEAVLEQWPTSAMKVLAKFPDVELVVPGHGEPGDKQLLIHTKALAESGAKQASAK* | |
90 >SPS-1 | |
91 MLIIFFVLTDLSLIAQTQPEYPVIRLNDELEVREILPNAFVITHKFPWGGNSLVVLIGEKYAVFVDTPYTPEATENVLDWINKQYGNRQFIEINTGYHVDNLGGNDALLHRNIPIIGSDKTVSLLRERGEATRQLTMGWLEGPGNEKFLKRHETIPYVGPSQIFQLTEGYHFTVGDEPIEVFFPGETHAPDNIVVYFPERKILFGGCMLRVGNGTGNRADANMDTWKSSVERLRDFDCVAVIPGHGIRFDPGVIENTISVLP* | |
92 >MYX-1 | |
93 MTLFPLRWFCAGALLITLSTACTRSTPAATVERNIPVKAQSQGPDEYVLADDVSVRKLAPGVWLHITVVTLEPFGRVSTNGLIIEDGETSLLVDTGWDARQGALLLDWARDTLRRPVRAAVVTHFHEDRLGGVPALAPHGIPVHGLEETARIATSLGLPGPTETFAKTSTVDSLELFFPGAGHAKDNIVVWHRDSGVLFGGCFVKDGASTNLGNVADADVAAWPASLSRTRQRFPEARVVVPGHGQPGGPELLGHTEALLR* | |
94 >STA-1 | |
95 MHPPLRPHPLWCSLRPATLALLLGVFGCRTSVPAPRPAAEPFTSITEDLRIQPLAPGVWRLVALSGEEWGHIPANGLVIAEGGGVLLVDPGWTEAQGERLLQWVEDTLKVPVHAGVATHFHADRTGGLRALQARGIPTHALALTAALTSQQDRPAPTHLFPGPAQQLGPVELFFPGPGHAPDNITVWHAASGILFGGCMVKDLKASSLGNLSDADLASWPRSVESLQARYPAARTVIPGHGEPGDTSLLAHTLELLRAGSR* | |
96 >ANA-1 | |
97 LRMRTLLARVVVLLLVPWSAARGEPETDLGDRVRARPLSAHAWLIRSVSALEGFGDVESNAVLVTGATESVLVDTPATDEQTAPVLAWAEKTLRRPVRHLIVTHWHADRMGGIGAARARQVATYAFGRTRALARQKGLVVPEHELGPAERLTLAGLSLATWYPGHGHTADNIVVWLPEDGVLVAGCFVKDAAAGTLGNVREADPVQWATGVAALRRRYPGARIVVPGHGAAGGSELLARTTALLEAHGSRGVPASGR* | |
98 >ECV-1 | |
99 MYYSLLISAFLLSISACGGKSEKLQEHLVAEQTSTFTEKEVYSSDKLIIKQVSPHTYVHVSFLDTDTFGKVACNGMIVISDGEAVVFDTPSTSNETSELLSFLEEEKLQVNAVVATHFHLDCLGGLEAFHARNIPSYAFKNTLSLASQHDFPQPQKGFSDELTLKVGTKAVFVHYFGEGHTQDNVIGYFPDDQVLFGGCLIKANGAGKGNLEDANVEAWPVTVNKISTAYPNLRLVIPGHGNWGDKTLLHYTETLFK* | |
100 >ORR-1 | |
101 MLKKNFKPLFFYLCFWMSLAACQSQSFGGLQFPKIVYQSEDLKVVQIAPDTFVHTSYLATQQWGKVPCNGMIVRHQREAMVFDTPTDEASSEALIHWIKNELKAEIKWVVPTHFHDDNLGGLPAFHRDKIMSIAYYRTQNLSKKHRKPQTITTFSATDSTWNLGGAKIQIGYYGKGHTEDNIVVYFPKDQVLFGGCLVKELGAGKGNLSDAFPKEWSATIQKVKHAYPEAKIVVPGHGKIGDKALLDYTAQLFKP* | |
102 >FIA-1 | |
103 MPHPMRFLFILLASTLFTHLAVAQAAQKPPLRVSRLSDRVFVHTTYGMYQGEPVPSNGLIVRTDDGVVLLDTGWDTEGNTDNTRQLLRWVADSLRLPVRLCIVTHSHDDKVGGIVELQKAGIRVVSTPLTAQKTVKQGYPSPDGILPADTTFTIGNVPIRTYFPGEGHTVDNIVVWLPSERILHGGCFVKSVAAFGMGYVGESNLTAWSGSIRNVKKRFGNARIVVPGHEEWTGPQALDHTLRLLEKYNANRH* | |
104 >ZOG-1 | |
105 MTYKSTVLLLFLITAFFSCKSQQPTLTYSSEDLKIIPLSKNSFVHISYLSTGDFGKVACNGLIYINQGQAVVFDTPTDNETSEELIHWITETKKQQIKAVVINHFHDDCLGGIEAFHELSIPSYASNTTIELAKKEGNPVPQIGFDTTNELTIGKQKIINRHFGEAHTKDNIVSYIPSEHLLFGGCALKSLNAAKGYLGDANTNEWGNTIKKIKAAYPDLKTAIPGHGEYGGSELLDYTISLFSTKQ | |
106 >TTU-1 | |
107 MRVFLVIFILFIAGDLCAGEEMPGFSVEEIEKNVFLHGSYSQVNGFGLVSSNGLVVIENKKAFIVDTPWSEKDTINLVQWIEGRNLVLIGSISTHSHEDRTAGIKWLNAHSIPTYASALTNELLKKDDKEVATKSFEGAELMLADGLIEAYYPGGGHTIDNIVVWLPKSQILFGGCLVRSVDSTGLGYVGEADIKNWSSSVENVLSKYPEIKAVVPGHGKIGGLSLLTHTKKLAISALPKLSN* | |
108 >PST-1 | |
109 MKLLFAALFVVMFCGLARASDSLPELRIEKIAEGVYLHTSFQQVQGYGLVDANGLVVLDGQGAYIIDTPWSERDTAALVAWLQERNYQVKASVSTHFHDDRTAGIEYLNAISVPTYASARTNALLKQNGKALATETFDDAPLWLLEGKVEVFYPGAGHSVDNLVVWLPEQKLLNGGCFVRAAAAGTLGNTADAVVSEWAASAERLQRRYPDAQLVIPGHGVPGDVSLLEHTRKLALAATAKD* | |
110 >SHN-1 | |
111 MRFILCLLLMVSSLTYAAQGPSKLKIVQLSDIVYQHTSLSDGDAYGVMAANGLIVIVGKQAYLIDTPWTEADTNTLIQWVTVKGLTIGGVIVTHFHQDSSGGLAVLNKLKINTYATTLTNQLLKANNREPASNEITSETFDLVPGVIQAYYPGAGHTQDNLVVWLAKSNLLFGGCLVQSFNNRKLLNIEDASIKDWPKSLQNVMVKYPNIDMVIPGHGQIGDVSLLELTQQLARKAL* | |
112 >Pedo-3 | |
113 MRYLLSFLLCLSAFASFAQNPKIKIKHLTGDLYVYTTYNTYKGALTDANAVYLVTNKGVVVIDAPWDATQFQPFLDSIQT | |
114 KHHQKVVLAIATHSHGDRAGGLAFFKSKGIKTYTNKLTDEILKTNKEPRAAYTFTNDTTFTVGQYKINTYYAGKGHTKDN | |
115 LVVWFPKDKVLFGGCLIKSIEANDLGYIGESDLAAWPKSIEKLKQKYPDTKIVITGHAAWGNRESLDHTLKLLREKK | |
116 >ERY-1 | |
117 MIARVLALAAALALPACVPGEIRSSVAEQEADRDIIRFGEVSFSQLAEGVWMHTTYLDLMGFGPIPSNGLLVVNGDNTIL | |
118 VDTAWTDEQTEQIVAWASMVLAKPVRAAVVTHAHQDKMGGMAALHGANIATWAHPLSNELAPEEGLVPARNAITFDANGW | |
119 ATGEAAQSLAPLRLYYPGGAHTRDNITVGLPELGIAFGGCMIKAGDASNLGNLADADTAAYAQSVRNFAAAFPDARTIAM | |
120 SHSPPEGRKAIERTLDLAEEL | |
121 >ALI-1 | |
122 MKFMFKLTLALLSSVIGFNAAAEPVVKPLQFEEITNNVFLVKSYREFKNLQSPKKPILVDANSLVYVDGKDAYLIDTPWN | |
123 ASNMPQLMTWIENRGLTLKKTVFSHFHEDQTGGLEYLQEHHFETYASALTNKFLKGDNKKATNHQFSGDNFVLLENKIEV | |
124 FYPGGGHTKDNAVVWLPKEKVLLGGCLMRANEVNTIGWTGDADMKAWAGSAQKVLTKYPQANFVVPGHGNVGEGTSIISH | |
125 TVDITGKX | |
126 >gi|38824|emb|CAA40386.1| CphA subclass-B2 [Aeromonas hydrophila] | |
127 MMKGWMKCGLAGAVVLMASFWGGSVRAAGMSLTQVSGPVYVVEDNYYVQENSMVYFGAKGVTVVGATWTP | |
128 DTARELHKLIKRVSRKPVLEVINTNYHTDRAGGNAYWKSIGAKVVSTRQTRDLMKSDWAEIVAFTRKGLP | |
129 EYPDLPLVLPNVVHDGDFTLQEGKVRAFYAGPAHTPDGIFVYFPDEQVLYGNCILKEKLGNLSFADVKAY | |
130 PQTLERLKAMKLPIKTVIGGHDSPLHGPELIDHYEALIKAAPQS | |
131 >gi|6456729|gb|AAF09244.1|AF197943_1 Sfh-1 subclass-B2 [Serratia fonticola] | |
132 MASEKNLTLTHFKGPLYIVEDKEYVQENSMVYIGTDGITIIGATWTPETAETLYKEIRKVSPLPINEVIN | |
133 TNYHTDRAGGNAYWKTLGAKIVATQMTYDLQKSQWGSIVNFTRQGNNKYPNLEKSLPDTVFPGDFNLQNG | |
134 SIRAMYLGEAHTKDGIFVYFPAERVLYGNCILKENLGNMSFANRTEYPKTLEKLKGLIEQGELKVDSIIA | |
135 GHDTPIHDVGLIDHYLTLLEKAPK |