Mercurial > repos > iuc > fargene
view test-data/contigs/hmmsearchresults/klebsiella_plasmid-class_B_1_2-hmmsearched.out @ 0:6f743c615c41 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fargene commit 867e4a6fad4c2622ad69517e2d4d9ba185109b72"
| author | iuc |
|---|---|
| date | Thu, 28 Nov 2019 14:39:41 -0500 |
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# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- FN396876.1_4 - 1439 b1_b2_70_centroids-aligned - 248 1.5e-82 265.4 0.0 1 1 3.3e-83 2e-82 264.9 0.0 7 244 383 634 376 636 0.94 Klebsiella pneumoniae plasmid pKpANDM-1 sequence carrying new metallo-beta-lactamase gene blaNDM-1, isolate KP-05-506 # # Program: hmmsearch # Version: 3.2.1 (June 2018) # Pipeline mode: SEARCH # Query file: /home/ubuntu/data/miniconda2/envs/fargene/lib/python2.7/site-packages/fargene_analysis/models/class_B_1_2.hmm # Target file: - # Option settings: hmmsearch --domtblout /home/ubuntu/data/fargene/tutorial/tutorialdata/tutorial_output_2/hmmsearchresults/klebsiella_plasmid-class_B_1_2-hmmsearched.out -E 1000 --domE 1000 /home/ubuntu/data/miniconda2/envs/fargene/lib/python2.7/site-packages/fargene_analysis/models/class_B_1_2.hmm - # Current dir: /home/ubuntu/data/fargene/tutorial/tutorialdata # Date: Wed Jul 17 13:17:48 2019 # [ok]