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comparison logex.xml @ 5:0cae005d8c4c draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastk commit c91b1ba99124a481c1f6cb1100abd0629974616b
author iuc
date Fri, 16 May 2025 18:49:35 +0000
parents 94217ea28453
children
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4:94217ea28453 5:0cae005d8c4c
1 <tool id="fastk_logex" name="FastK Logex" version="@TOOL_VERSION@+galaxy4" profile="24.2" license="MIT"> 1 <tool id="fastk_logex" name="FastK Logex" version="@TOOL_VERSION@+galaxy5" profile="24.2" license="MIT">
2 <description>Performs binary operations on the generated Ktab files from FASTK suite</description> 2 <description>Performs binary operations on the generated Ktab files from FASTK suite</description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="xrefs"/> 6 <expand macro="xrefs"/>
37 cp "$j" input_files/${i+1}.ktab && 37 cp "$j" input_files/${i+1}.ktab &&
38 #end for 38 #end for
39 #for $p, $q in enumerate($input_type.input_ktab_collection_tar): 39 #for $p, $q in enumerate($input_type.input_ktab_collection_tar):
40 ln -s "$q" input_files/input_ktab_${p+1}.tar && 40 ln -s "$q" input_files/input_ktab_${p+1}.tar &&
41 tar -tf input_files/input_ktab_${p+1}.tar | grep '/\.[^/]*$' | tar --strip-components=1 -xf input_files/input_ktab_${p+1}.tar -C input_files/ -T - && 41 tar -tf input_files/input_ktab_${p+1}.tar | grep '/\.[^/]*$' | tar --strip-components=1 -xf input_files/input_ktab_${p+1}.tar -C input_files/ -T - &&
42 for file_name in input_files/.output.ktab.*; do
43 if [ -f "\$file_name" ]; then
44 new_name=\$(echo "\$file_name" | sed "s/\.output\.ktab\./\.$((p+1))\.ktab\./");
45 mv "\$file_name" "\$new_name";
46 fi
47 done &&
42 rm input_files/input_ktab_${p+1}.tar && 48 rm input_files/input_ktab_${p+1}.tar &&
43 #end for 49 #end for
44 COUNT=\$(ls -1 input_files/*.ktab 2>/dev/null | wc -l) && 50 COUNT=\$(ls -1 input_files/*.ktab 2>/dev/null | wc -l) &&
45 if [ "\$COUNT" -ge 2 ]; then 51 if [ "\$COUNT" -ge 2 ]; then
46 #if $input_type.operation_sel.operation_selector_collection == 'unionsum': 52 #if $input_type.operation_sel.operation_selector_collection == 'unionsum':