Mercurial > repos > iuc > fastp
comparison fastp.xml @ 8:1d8fe9bc4cb0 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastp commit 6e59980ea50d84a849190460ae44c055f643355f
| author | iuc |
|---|---|
| date | Tue, 28 May 2019 10:18:59 -0400 |
| parents | 6c2351178f8d |
| children | dbf9c561ef29 |
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| 7:6c2351178f8d | 8:1d8fe9bc4cb0 |
|---|---|
| 1 <tool id="fastp" name="fastp" version="@WRAPPER_VERSION@"> | 1 <tool id="fastp" name="fastp" version="@WRAPPER_VERSION@+galaxy1"> |
| 2 <description>- fast all-in-one preprocessing for FASTQ files</description> | 2 <description>- fast all-in-one preprocessing for FASTQ files</description> |
| 3 <macros> | 3 <macros> |
| 4 <import>macros.xml</import> | 4 <import>macros.xml</import> |
| 5 </macros> | 5 </macros> |
| 6 <requirements> | 6 <requirements> |
| 312 <param name="report_json" type="boolean" truevalue="True" falsevalue="False" checked="False" label="Output JSON report" help="The JSON report contains all the data visualized in the HTML report. The format of the JSON report is manually optimized to be easily readable by humans and is compatible with MultiQC"/> | 312 <param name="report_json" type="boolean" truevalue="True" falsevalue="False" checked="False" label="Output JSON report" help="The JSON report contains all the data visualized in the HTML report. The format of the JSON report is manually optimized to be easily readable by humans and is compatible with MultiQC"/> |
| 313 </section> | 313 </section> |
| 314 </inputs> | 314 </inputs> |
| 315 | 315 |
| 316 <outputs> | 316 <outputs> |
| 317 <data name="out1" format_source="in1" label="${tool.name} on ${on_string}: Read 1 Output"> | 317 <data name="out1" format_source="in1" label="${tool.name} on ${on_string}: Read 1 output"> |
| 318 <filter>single_paired['single_paired_selector'] in ["single", "paired"]</filter> | 318 <filter>single_paired['single_paired_selector'] in ["single", "paired"]</filter> |
| 319 </data> | 319 </data> |
| 320 <data name="out2" format_source="in2" label="${tool.name} on ${on_string}: Read 2 Output"> | 320 <data name="out2" format_source="in2" label="${tool.name} on ${on_string}: Read 2 output"> |
| 321 <filter>single_paired['single_paired_selector'] == "paired"</filter> | 321 <filter>single_paired['single_paired_selector'] == "paired"</filter> |
| 322 </data> | 322 </data> |
| 323 <collection name="output_paired_coll" type="paired" structured_like="paired_input" inherit_format="true" label="Paired-end output of ${tool.name} on ${on_string}"> | 323 <collection name="output_paired_coll" type="paired" format_source="paired_input['forward']" label="${tool.name} on ${on_string}: Paired-end output"> |
| 324 <filter>single_paired['single_paired_selector'] == "paired_collection"</filter> | 324 <filter>single_paired['single_paired_selector'] == "paired_collection"</filter> |
| 325 </collection> | 325 </collection> |
| 326 <data name="report_html" format="html" from_work_dir="fastp.html" label="${tool.name} on ${on_string}: HTML Report"> | 326 <data name="report_html" format="html" from_work_dir="fastp.html" label="${tool.name} on ${on_string}: HTML report"> |
| 327 <filter>output_options['report_html'] is True</filter> | 327 <filter>output_options['report_html'] is True</filter> |
| 328 </data> | 328 </data> |
| 329 <data name="report_json" format="json" from_work_dir="fastp.json" label="${tool.name} on ${on_string}: JSON Report"> | 329 <data name="report_json" format="json" from_work_dir="fastp.json" label="${tool.name} on ${on_string}: JSON report"> |
| 330 <filter>output_options['report_json'] is True</filter> | 330 <filter>output_options['report_json'] is True</filter> |
| 331 </data> | 331 </data> |
| 332 </outputs> | 332 </outputs> |
| 333 | 333 |
| 334 <tests> | 334 <tests> |