Mercurial > repos > iuc > fastp
diff macros.xml @ 11:c59d48774d03 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastp commit 61d055a8abacf009e8afe2d72377e6769ad08f42
author | iuc |
---|---|
date | Tue, 05 Mar 2024 08:41:43 +0000 |
parents | 65b93b623c77 |
children | d60c3f704da0 |
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--- a/macros.xml Thu Feb 03 17:20:32 2022 +0000 +++ b/macros.xml Tue Mar 05 08:41:43 2024 +0000 @@ -1,16 +1,18 @@ <macros> - <token name="@WRAPPER_VERSION@">0.23.2</token> - + <token name="@TOOL_VERSION@">0.23.4</token> + <xml name="biotools"> + <xrefs> + <xref type="bio.tools"> + fastp + </xref> + </xrefs> + </xml> <xml name="adapter_trimming_options"> <section name="adapter_trimming_options" title="Adapter Trimming Options" expanded="False"> <param name="disable_adapter_trimming" argument="-A" type="boolean" truevalue="-A" falsevalue="" checked="false" label="Disable adapter trimming" help="Adapter trimming is enabled by default. If this option is specified, adapter trimming is disabled."/> <expand macro="adapter_sequence" read_number="1" /> <yield /> </section> - <section name="global_trimming_options" title="Global Trimming Options" expanded="False"> - <param name="trim_front1" argument="-f" type="integer" optional="true" label="Trim front for input 1" help="Trimming how many bases in front for read1, default is 0."/> - <param name="trim_tail1" argument="-t" type="integer" optional="true" label="Trim tail for input 1" help="Trimming how many bases in tail for read1, default is 0."/> - </section> </xml> <xml name="global_trimming_options"> @@ -29,7 +31,7 @@ </xml> <xml name="adapter_sequence" token_read_number="1"> - <param name="adapter_sequence@READ_NUMBER@" argument="--adapter_sequence@READ_NUMBER@" type="text" optional="true" label="Adapter sequence for input @READ_NUMBER@" help="The adapter for read@READ_NUMBER@. For SE data, if not specified, the adapter will be auto-detected. For PE data, this is used if R1/R2 are found not overlapped."> + <param argument="--adapter_sequence@READ_NUMBER@" type="text" optional="true" label="Adapter sequence for input @READ_NUMBER@" help="The adapter for read@READ_NUMBER@. For SE data, if not specified, the adapter will be auto-detected. For PE data, this is used if R1/R2 are found not overlapped."> <sanitizer> <valid> <add value="A"/> @@ -46,7 +48,7 @@ </xml> <xml name="poly_g_min_len"> - <param name="poly_g_min_len" argument="--poly_g_min_len" type="integer" optional="true" label="PolyG minimum length" + <param argument="--poly_g_min_len" type="integer" optional="true" label="PolyG minimum length" help="The minimum length to detect polyG in the read tail. 10 by default."/> </xml> </macros>