Mercurial > repos > iuc > fastp

diff macros.xml @ 11:c59d48774d03 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastp commit 61d055a8abacf009e8afe2d72377e6769ad08f42
author iuc
date Tue, 05 Mar 2024 08:41:43 +0000
parents 65b93b623c77
children
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--- a/macros.xml	Thu Feb 03 17:20:32 2022 +0000
+++ b/macros.xml	Tue Mar 05 08:41:43 2024 +0000
@@ -1,16 +1,18 @@
 <macros>
-    <token name="@WRAPPER_VERSION@">0.23.2</token>
-
+    <token name="@TOOL_VERSION@">0.23.4</token>
+    <xml name="biotools">
+        <xrefs>
+            <xref type="bio.tools">
+                fastp
+            </xref>
+        </xrefs>
+    </xml>
     <xml name="adapter_trimming_options">
         <section name="adapter_trimming_options" title="Adapter Trimming Options" expanded="False">
             <param name="disable_adapter_trimming" argument="-A" type="boolean" truevalue="-A" falsevalue="" checked="false" label="Disable adapter trimming" help="Adapter trimming is enabled by default. If this option is specified, adapter trimming is disabled."/>
             <expand macro="adapter_sequence" read_number="1" />
             <yield />
         </section>
-        <section name="global_trimming_options" title="Global Trimming Options" expanded="False">
-            <param name="trim_front1" argument="-f" type="integer" optional="true" label="Trim front for input 1" help="Trimming how many bases in front for read1, default is 0."/>
-            <param name="trim_tail1" argument="-t" type="integer" optional="true" label="Trim tail for input 1" help="Trimming how many bases in tail for read1, default is 0."/>
-        </section>
     </xml>
 
     <xml name="global_trimming_options">
@@ -29,7 +31,7 @@
     </xml>
 
     <xml name="adapter_sequence" token_read_number="1">
-        <param name="adapter_sequence@READ_NUMBER@" argument="--adapter_sequence@READ_NUMBER@" type="text" optional="true" label="Adapter sequence for input @READ_NUMBER@" help="The adapter for read@READ_NUMBER@. For SE data, if not specified, the adapter will be auto-detected. For PE data, this is used if R1/R2 are found not overlapped.">
+        <param argument="--adapter_sequence@READ_NUMBER@" type="text" optional="true" label="Adapter sequence for input @READ_NUMBER@" help="The adapter for read@READ_NUMBER@. For SE data, if not specified, the adapter will be auto-detected. For PE data, this is used if R1/R2 are found not overlapped.">
             <sanitizer>
                 <valid>
                     <add value="A"/>
@@ -46,7 +48,7 @@
     </xml>
 
     <xml name="poly_g_min_len">
-        <param name="poly_g_min_len" argument="--poly_g_min_len" type="integer" optional="true" label="PolyG minimum length"
+        <param argument="--poly_g_min_len" type="integer" optional="true" label="PolyG minimum length"
             help="The minimum length to detect polyG in the read tail. 10 by default."/>
     </xml>
 </macros>