Mercurial > repos > iuc > fastp
diff macros.xml @ 15:a626e8c0e1ba draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastp commit 17a0a67dfbc7541a7fe3618cfbbb71d814042889
| author | iuc |
|---|---|
| date | Fri, 15 Nov 2024 15:31:53 +0000 |
| parents | ecb9f4854617 |
| children |
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--- a/macros.xml Mon Nov 11 14:53:41 2024 +0000 +++ b/macros.xml Fri Nov 15 15:31:53 2024 +0000 @@ -61,11 +61,28 @@ </xml> <xml name="in" token_read_number="1" token_argument="-i"> - <param name="in@READ_NUMBER@" argument="@ARGUMENT@" type="data" format="fastqsanger,fastqsanger.gz,fastqillumina,fastqillumina.gz" label="Input @READ_NUMBER@" help="Input FASTQ file #@READ_NUMBER@"/> + <param name="in@READ_NUMBER@" argument="@ARGUMENT@" type="data" format="fastqsanger,fastqsanger.gz" label="Input @READ_NUMBER@" help="Input FASTQ file #@READ_NUMBER@"/> </xml> <xml name="poly_g_min_len"> <param argument="--poly_g_min_len" type="integer" optional="true" label="PolyG minimum length" help="The minimum length to detect polyG in the read tail. 10 by default."/> </xml> -</macros> + + <xml name="format_actions" token_read_number="1" token_forward_reverse="forward"> + <actions> + <conditional name="single_paired.single_paired_selector"> + <when value="paired"> + <action type="format"> + <option type="from_param" name="single_paired.in@READ_NUMBER@" param_attribute="ext" /> + </action> + </when> + <when value="paired_collection"> + <action type="format"> + <option type="from_param" name="single_paired.paired_input" param_attribute="@FORWARD_REVERSE@.ext" /> + </action> + </when> + </conditional> + </actions> + </xml> +</macros> \ No newline at end of file