Mercurial > repos > iuc > fastp

changeset 9:dbf9c561ef29 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastp commit a64eb7904f80e90a5faff04ea3fb797ee1e07d36"
author iuc
date Tue, 21 Apr 2020 16:45:20 -0400
parents 1d8fe9bc4cb0
children 65b93b623c77
files fastp.xml macros.xml
diffstat 2 files changed, 7 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/fastp.xml	Tue May 28 10:18:59 2019 -0400
+++ b/fastp.xml	Tue Apr 21 16:45:20 2020 -0400
@@ -1,4 +1,4 @@
-<tool id="fastp" name="fastp" version="@WRAPPER_VERSION@+galaxy1">
+<tool id="fastp" name="fastp" version="@WRAPPER_VERSION@+galaxy0">
     <description>- fast all-in-one preprocessing for FASTQ files</description>
     <macros>
         <import>macros.xml</import>
@@ -132,6 +132,10 @@
     -l $filter_options.length_filtering_options.length_required
 #end if
 
+#if str($filter_options.length_filtering_options.length_limit):
+    --length_limit $filter_options.length_filtering_options.length_limit
+#end if
+
 ## Low complexity filtering options
 
 $filter_options.low_complexity_filter.enable_low_complexity_filter
@@ -251,6 +255,7 @@
             <section name="length_filtering_options" title="Length filtering options" expanded="True">
                 <param name="disable_length_filtering" argument="-L" type="boolean" truevalue="-L" falsevalue="" checked="false" label="Disable length filtering" help="Length filtering is enabled by default. If this option is specified, length filtering is disabled."/>
                 <param name="length_required" argument="-l" type="integer" optional="true" label="Length required" help="Reads shorter than this value will be discarded. Default is 15."/>
+                <param name="length_limit" argument="--length_limit" type="integer" optional="true" label="Maximum length" help="Reads longer than this value will be discarded. Default is 0 and means no limitation."/>
             </section>
 
             <section name="low_complexity_filter" title="Low complexity filtering options" expanded="True">
--- a/macros.xml	Tue May 28 10:18:59 2019 -0400
+++ b/macros.xml	Tue Apr 21 16:45:20 2020 -0400
@@ -1,5 +1,5 @@
 <macros>
-    <token name="@WRAPPER_VERSION@">0.19.5</token>
+    <token name="@WRAPPER_VERSION@">0.20.1</token>
 
     <xml name="adapter_trimming_options">
         <section name="adapter_trimming_options" title="Adapter Trimming Options" expanded="False">