Mercurial > repos > iuc > fastq_groupmerge
diff fastq_groupmerge.xml @ 1:bbc3d29a94e5 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/fastq_groupmerge commit 19ea498c50afa7509379116596bc6d5287a6ba2b
| author | iuc |
|---|---|
| date | Thu, 13 Nov 2025 15:33:46 +0000 |
| parents | acdbb0af0a75 |
| children |
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--- a/fastq_groupmerge.xml Sun Nov 09 22:44:31 2025 +0000 +++ b/fastq_groupmerge.xml Thu Nov 13 15:33:46 2025 +0000 @@ -1,6 +1,7 @@ <tool id="fastq_groupmerge" name="Fastq groupmerge" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@"> + <description>Group FASTQ files together based on a set grouping in a metadata file</description> <macros> - <token name="@TOOL_VERSION@">1.0.1</token> + <token name="@TOOL_VERSION@">1.0.2</token> <token name="@VERSION_SUFFIX@">0</token> <token name="@PROFILE@">25.0</token> </macros> @@ -51,10 +52,10 @@ <option value="pair" selected="true">Paired reads</option> </param> <when value="single"> - <param name="samples" type="data_collection" collection_type="list" format="fastq,fastq.gz" label="Input single sample(s) read(s)"/> + <param name="samples" type="data_collection" collection_type="list" format="fastqsanger,fastqsanger.gz" label="Input single sample(s) read(s)"/> </when> <when value="pair"> - <param name="samples" type="data_collection" collection_type="list:paired" format="fastq,fastq.gz" label="Input paired sample(s) read(s) collection"/> + <param name="samples" type="data_collection" collection_type="list:paired" format="fastqsanger,fastqsanger.gz" label="Input paired sample(s) read(s) collection"/> </when> </conditional> <param argument="--metadata" type="data" multiple="false" format="tabular,csv,tsv" optional="true" label="Metadata table file" help="Metadata file with first column sample name and another column with group ID. Multiple grouping is allowed, see the help section. If no metadata table is provided, this tool will merge all samples!"/> @@ -84,8 +85,8 @@ </element> <element name="B1"> <collection type="paired"> - <element name="forward" value="B1_forward.fastq" ftype="fastq"/> - <element name="reverse" value="B1_reverse.fastq" ftype="fastq"/> + <element name="forward" value="B1_forward.fastqsanger.gz" ftype="fastqsanger.gz"/> + <element name="reverse" value="B1_reverse.fastqsanger.gz" ftype="fastqsanger.gz"/> </collection> </element> </collection> @@ -139,8 +140,8 @@ <collection type="list"> <element name="A1_forward" value="A1_forward.fastq.gz" ftype="fastq.gz"/> <element name="A1_reverse" value="A1_reverse.fastq.gz" ftype="fastq.gz"/> - <element name="B1_forward" value="B1_forward.fastq" ftype="fastq"/> - <element name="B1_reverse" value="B1_reverse.fastq" ftype="fastq"/> + <element name="B1_forward" value="B1_forward.fastqsanger.gz" ftype="fastqsanger.gz"/> + <element name="B1_reverse" value="B1_reverse.fastqsanger.gz" ftype="fastqsanger.gz"/> </collection> </param> </conditional> @@ -162,8 +163,8 @@ </element> <element name="B1"> <collection type="paired"> - <element name="forward" value="B1_forward.fastq" ftype="fastq"/> - <element name="reverse" value="B1_reverse.fastq" ftype="fastq"/> + <element name="forward" value="B1_forward.fastqsanger.gz" ftype="fastqsanger.gz"/> + <element name="reverse" value="B1_reverse.fastqsanger.gz" ftype="fastqsanger.gz"/> </collection> </element> </collection>