# HG changeset patch
# User iuc
# Date 1763048026 0
# Node ID bbc3d29a94e575f65aa39d7f964273c2fd02b413
# Parent  acdbb0af0a7536b6af10b9bf0529fd774fd8f930
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/fastq_groupmerge commit 19ea498c50afa7509379116596bc6d5287a6ba2b

diff -r acdbb0af0a75 -r bbc3d29a94e5 fastq_groupmerge.xml
--- a/fastq_groupmerge.xml	Sun Nov 09 22:44:31 2025 +0000
+++ b/fastq_groupmerge.xml	Thu Nov 13 15:33:46 2025 +0000
@@ -1,6 +1,7 @@
 <tool id="fastq_groupmerge" name="Fastq groupmerge" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
+    <description>Group FASTQ files together based on a set grouping in a metadata file</description>
     <macros>
-        <token name="@TOOL_VERSION@">1.0.1</token>
+        <token name="@TOOL_VERSION@">1.0.2</token>
         <token name="@VERSION_SUFFIX@">0</token>
         <token name="@PROFILE@">25.0</token>
     </macros>
@@ -51,10 +52,10 @@
                 <option value="pair" selected="true">Paired reads</option>
             </param>
             <when value="single">
-                <param name="samples" type="data_collection" collection_type="list" format="fastq,fastq.gz" label="Input single sample(s) read(s)"/>
+                <param name="samples" type="data_collection" collection_type="list" format="fastqsanger,fastqsanger.gz" label="Input single sample(s) read(s)"/>
                 </when>
             <when value="pair">
-                <param name="samples" type="data_collection" collection_type="list:paired" format="fastq,fastq.gz" label="Input paired sample(s) read(s) collection"/>
+                <param name="samples" type="data_collection" collection_type="list:paired" format="fastqsanger,fastqsanger.gz" label="Input paired sample(s) read(s) collection"/>
             </when>
         </conditional>
         <param argument="--metadata" type="data" multiple="false" format="tabular,csv,tsv" optional="true" label="Metadata table file" help="Metadata file with first column sample name and another column with group ID. Multiple grouping is allowed, see the help section. If no metadata table is provided, this tool will merge all samples!"/>
@@ -84,8 +85,8 @@
                         </element>
                         <element name="B1">
                             <collection type="paired">
-                                <element name="forward" value="B1_forward.fastq" ftype="fastq"/>
-                                <element name="reverse" value="B1_reverse.fastq" ftype="fastq"/>
+                                <element name="forward" value="B1_forward.fastqsanger.gz" ftype="fastqsanger.gz"/>
+                                <element name="reverse" value="B1_reverse.fastqsanger.gz" ftype="fastqsanger.gz"/>
                             </collection>
                         </element>
                     </collection>
@@ -139,8 +140,8 @@
                     <collection type="list">
                         <element name="A1_forward" value="A1_forward.fastq.gz" ftype="fastq.gz"/>
                         <element name="A1_reverse" value="A1_reverse.fastq.gz" ftype="fastq.gz"/>
-                        <element name="B1_forward" value="B1_forward.fastq" ftype="fastq"/>
-                        <element name="B1_reverse" value="B1_reverse.fastq" ftype="fastq"/>
+                        <element name="B1_forward" value="B1_forward.fastqsanger.gz" ftype="fastqsanger.gz"/>
+                        <element name="B1_reverse" value="B1_reverse.fastqsanger.gz" ftype="fastqsanger.gz"/>
                     </collection>
                 </param>
             </conditional>
@@ -162,8 +163,8 @@
                         </element>
                         <element name="B1">
                             <collection type="paired">
-                                <element name="forward" value="B1_forward.fastq" ftype="fastq"/>
-                                <element name="reverse" value="B1_reverse.fastq" ftype="fastq"/>
+                                <element name="forward" value="B1_forward.fastqsanger.gz" ftype="fastqsanger.gz"/>
+                                <element name="reverse" value="B1_reverse.fastqsanger.gz" ftype="fastqsanger.gz"/>
                             </collection>
                         </element>
                     </collection>
diff -r acdbb0af0a75 -r bbc3d29a94e5 test-data/B1_forward.fastq
--- a/test-data/B1_forward.fastq	Sun Nov 09 22:44:31 2025 +0000
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,4 +0,0 @@
-@S0R15658/1
-AATGGGAAGATGATTTTAGGGAATATCTCAAAATGCTGGATGAGACTAAACCTGTAGTCTTATGTGGGGACTTAAGCGTCGCTCATAAAGAGATTGACTTGAAAAATCCTTCAGCGAATCGTAAAAACCCTGGCTTTAGTTATCAAGAAC
-+
-AADGGGEEIIHII<JCKKJKKKFFJFJKIJIJKKKII@JHKKKDKEEJKJJHEKJK$CIEH>JEKGIEGDGE@EE$K$EIEEEADC?DEEE?EEEECDC1E9EEEDEEDEE=)CCCEDE1BC??FE7?7CAEDEDAAC3E$EE$;;CEE$
diff -r acdbb0af0a75 -r bbc3d29a94e5 test-data/B1_forward.fastqsanger.gz
Binary file test-data/B1_forward.fastqsanger.gz has changed
diff -r acdbb0af0a75 -r bbc3d29a94e5 test-data/B1_reverse.fastq
--- a/test-data/B1_reverse.fastq	Sun Nov 09 22:44:31 2025 +0000
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,4 +0,0 @@
-@S0R11796/2
-AACCCCGTTGCTCACGACGGAATCGTTGTAAGTGATCTTTCTTAAGTTTTGTAATATTTTGACCAGTTACACCAATGGTAAGGCTGGTCACCGAGTCAATTGTGGAAATGCCATTAAGAAGCGTCGTTTTACCAGAACCTTATGGTCCCA
-+
-ADD>E$3E=I=?IHHJKKKJK$GKKFHKJGFKKK*KK:FKJGKCJCIH8I:KHDKDF>B$DEK<B$848DKEFIGD;EG@)$:ECGGE6?EDEEEEEE$$:FEEEDA$$??$?BEEAECCFAEE=DD4@D6CDEBCAECB$EC9$=EA$;
diff -r acdbb0af0a75 -r bbc3d29a94e5 test-data/B1_reverse.fastqsanger.gz
Binary file test-data/B1_reverse.fastqsanger.gz has changed