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comparison tool_dependencies.xml @ 3:5fb45d8bbc07 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/fastqc commit dd2bada7005c72c16cd3ea047cdc64896c1f8977
author iuc
date Wed, 13 Jan 2016 17:57:35 -0500
parents 39b1c10532a4
children
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2:2611a96c30b7 3:5fb45d8bbc07
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool_dependency> 2 <tool_dependency>
3 <package name="fastqc_dist_0_10_1" version="0.10.1"> 3 <package name="FastQC" version="0.11.4">
4 <install version="1.0"> 4 <install version="1.0">
5 <actions> 5 <actions_group>
6 <action type="download_by_url">http://www.bioinformatics.babraham.ac.uk/projects/fastqc/fastqc_v0.10.1.zip</action> 6 <actions os="linux" architecture="x86_64">
7 <action type="move_directory_files"> 7 <action type="download_by_url" sha256sum="adb233f9fae7b02fe99e716664502adfec1b9a3fbb84eed4497122d6d33d1fe7">https://depot.galaxyproject.org/software/fastqc/fastqc_0.11.4_linux_all.zip</action>
8 <source_directory>../FastQC</source_directory> 8 <action type="move_directory_files">
9 <destination_directory>$INSTALL_DIR/fastqc_dist</destination_directory> 9 <source_directory>../FastQC</source_directory>
10 </action> 10 <destination_directory>$INSTALL_DIR</destination_directory>
11 <action type="shell_command">chmod ugo+x $INSTALL_DIR/fastqc_dist/fastqc</action> 11 <action type="shell_command">chmod ugo+x $INSTALL_DIR/fastqc</action>
12 </action>
13 </actions>
14 <actions os="darwin" architecture="x86_64">
15 <action type="download_by_url" sha256sum="bd4089397cfa1086d81e7b29508542d2478917df8d1ef1fb494616da1b8e651a">https://depot.galaxyproject.org/software/fastqc/fastqc_0.11.4_darwin_all.dmg</action>
16 <action type="shell_command">
17 hdiutil attach fastqc_v0.11.4.dmg &amp;&amp;
18 cp -R /Volumes/FastQC/FastQC.app $INSTALL_DIR &amp;&amp;
19 hdiutil detach /Volumes/FastQC
20 </action>
21 <action type="shell_command">chmod ugo+x $INSTALL_DIR/fastqc</action>
22 </actions>
12 <action type="set_environment"> 23 <action type="set_environment">
13 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/fastqc_dist</environment_variable> 24 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
14 </action> 25 </action>
15 </actions> 26 </actions_group>
16 </install> 27 </install>
17 </package> 28 </package>
18 </tool_dependency> 29 </tool_dependency>