diff tool_dependencies.xml @ 1:39b1c10532a4 draft

Remove intermediate directory
author iuc
date Sat, 18 Jan 2014 22:33:24 -0500
parents
children 5fb45d8bbc07
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Sat Jan 18 22:33:24 2014 -0500
@@ -0,0 +1,18 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="fastqc_dist_0_10_1" version="0.10.1">
+        <install version="1.0">
+            <actions>
+                <action type="download_by_url">http://www.bioinformatics.babraham.ac.uk/projects/fastqc/fastqc_v0.10.1.zip</action>
+                <action type="move_directory_files">
+                    <source_directory>../FastQC</source_directory>
+                    <destination_directory>$INSTALL_DIR/fastqc_dist</destination_directory>
+                </action>                
+                <action type="shell_command">chmod ugo+x $INSTALL_DIR/fastqc_dist/fastqc</action>
+                <action type="set_environment">
+                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/fastqc_dist</environment_variable>
+                </action>
+            </actions>
+        </install>
+    </package>
+</tool_dependency>