Mercurial > repos > iuc > fastqc
diff test-data/fastqc_report.html @ 3:5fb45d8bbc07 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/fastqc commit dd2bada7005c72c16cd3ea047cdc64896c1f8977
| author | iuc |
|---|---|
| date | Wed, 13 Jan 2016 17:57:35 -0500 |
| parents | 2611a96c30b7 |
| children |
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--- a/test-data/fastqc_report.html Sat Jan 18 22:33:36 2014 -0500 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,1810 +0,0 @@ -<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Strict//EN"> -<html> -<head><title>1000gsample.fastq FastQC Report</title> - -<style type="text/css"> - - @media screen { - div.summary { - width: 18em; - position:fixed; - top: 3em; - margin:1em 0 0 1em; - } - - div.main { - display:block; - position:absolute; - overflow:auto; - height:auto; - width:auto; - top:4.5em; - bottom:2.3em; - left:18em; - right:0; - border-left: 1px solid #CCC; - padding:0 0 0 1em; - background-color: white; - z-index:1; - } - - div.header { - background-color: #EEE; - border:0; - margin:0; - padding: 0.5em; - font-size: 200%; - font-weight: bold; - position:fixed; - width:100%; - top:0; - left:0; - z-index:2; - } - - div.footer { - background-color: #EEE; - border:0; - margin:0; - padding:0.5em; - height: 1.3em; - overflow:hidden; - font-size: 100%; - font-weight: bold; - position:fixed; - bottom:0; - width:100%; - z-index:2; - } - - img.indented { - margin-left: 3em; - } - } - - @media print { - img { - max-width:100% !important; - page-break-inside: avoid; - } - h2, h3 { - page-break-after: avoid; - } - div.header { - background-color: #FFF; - } - - } - - body { - font-family: sans-serif; - color: #000; - background-color: #FFF; - border: 0; - margin: 0; - padding: 0; - } - - div.header { - border:0; - margin:0; - padding: 0.5em; - font-size: 200%; - font-weight: bold; - width:100%; - } - - #header_title { - display:inline-block; - float:left; - clear:left; - } - #header_filename { - display:inline-block; - float:right; - clear:right; - font-size: 50%; - margin-right:2em; - text-align: right; - } - - div.header h3 { - font-size: 50%; - margin-bottom: 0; - } - - div.summary ul { - padding-left:0; - list-style-type:none; - } - - div.summary ul li img { - margin-bottom:-0.5em; - margin-top:0.5em; - } - - div.main { - background-color: white; - } - - div.module { - padding-bottom:1.5em; - padding-top:1.5em; - } - - div.footer { - background-color: #EEE; - border:0; - margin:0; - padding: 0.5em; - font-size: 100%; - font-weight: bold; - width:100%; - } - - - a { - color: #000080; - } - - a:hover { - color: #800000; - } - - h2 { - color: #800000; - padding-bottom: 0; - margin-bottom: 0; - clear:left; - } - - table { - margin-left: 3em; - text-align: center; - } - - th { - text-align: center; - background-color: #000080; - color: #FFF; - padding: 0.4em; - } - - td { - font-family: monospace; - text-align: left; - background-color: #EEE; - color: #000; - padding: 0.4em; - } - - img { - padding-top: 0; - margin-top: 0; - border-top: 0; - } - - - p { - padding-top: 0; - margin-top: 0; - } - -</style> - -</head> -<body> -<div class="header"> -<div id="header_title"><img src="fastqc_icon.png" alt="FastQC">FastQC Report</div> -<div id="header_filename"> -Sat 8 Jun 2013<br /> -1000gsample.fastq -</div> -</div> -<div class="summary"> -<h2>Summary</h2> -<ul> -<li><img src="tick.png" alt="[PASS]"> <a href="#M0">Basic Statistics</a></li> -<li><img src="warning.png" alt="[WARNING]"> <a href="#M1">Per base sequence quality</a></li> -<li><img src="warning.png" alt="[WARNING]"> <a href="#M2">Per sequence quality scores</a></li> -<li><img src="warning.png" alt="[WARNING]"> <a href="#M3">Per base sequence content</a></li> -<li><img src="tick.png" alt="[PASS]"> <a href="#M4">Per base GC content</a></li> -<li><img src="warning.png" alt="[WARNING]"> <a href="#M5">Per sequence GC content</a></li> -<li><img src="tick.png" alt="[PASS]"> <a href="#M6">Per base N content</a></li> -<li><img src="tick.png" alt="[PASS]"> <a href="#M7">Sequence Length Distribution</a></li> -<li><img src="tick.png" alt="[PASS]"> <a href="#M8">Sequence Duplication Levels</a></li> -<li><img src="warning.png" alt="[WARNING]"> <a href="#M9">Overrepresented sequences</a></li> -<li><img src="error.png" alt="[FAIL]"> <a href="#M10">Kmer Content</a></li> -</ul> -</div> -<div class="main"> -<div class="module"><h2 id="M0"><img src="tick.png" alt="[OK]"> Basic Statistics</h2> -<table> -<tr> -<th>Measure</th> -<th>Value</th> -</tr> -<tr> -<td>Filename</td> -<td>1000gsample.fastq</td> -</tr> -<tr> -<td>File type</td> -<td>Conventional base calls</td> -</tr> -<tr> -<td>Encoding</td> -<td>Sanger / Illumina 1.9</td> -</tr> -<tr> -<td>Total Sequences</td> -<td>5000</td> -</tr> -<tr> -<td>Filtered Sequences</td> -<td>0</td> -</tr> -<tr> -<td>Sequence length</td> -<td>54</td> -</tr> -<tr> -<td>%GC</td> -<td>43</td> -</tr> -</table> -</div> -<div class="module"><h2 id="M1"><img src="warning.png" alt="[WARN]"> Per base sequence quality</h2> -<p><img class="indented" src="per_base_quality.png" alt="Per base quality graph"></p> -</div> -<div class="module"><h2 id="M2"><img src="warning.png" alt="[WARN]"> Per sequence quality scores</h2> -<p><img class="indented" src="per_sequence_quality.png" alt="Per Sequence quality graph"></p> -</div> -<div class="module"><h2 id="M3"><img src="warning.png" alt="[WARN]"> Per base sequence content</h2> -<p><img class="indented" src="per_base_sequence_content.png" alt="Per base sequence content"></p> -</div> -<div class="module"><h2 id="M4"><img src="tick.png" alt="[OK]"> Per base GC content</h2> -<p><img class="indented" src="per_base_gc_content.png" alt="Per base GC content graph"></p> -</div> -<div class="module"><h2 id="M5"><img src="warning.png" alt="[WARN]"> Per sequence GC content</h2> -<p><img class="indented" src="per_sequence_gc_content.png" alt="Per sequence GC content graph"></p> -</div> -<div class="module"><h2 id="M6"><img src="tick.png" alt="[OK]"> Per base N content</h2> -<p><img class="indented" src="per_base_n_content.png" alt="N content graph"></p> -</div> -<div class="module"><h2 id="M7"><img src="tick.png" alt="[OK]"> Sequence Length Distribution</h2> -<p><img class="indented" src="sequence_length_distribution.png" alt="Sequence length distribution"></p> -</div> -<div class="module"><h2 id="M8"><img src="tick.png" alt="[OK]"> Sequence Duplication Levels</h2> -<p><img class="indented" src="duplication_levels.png" alt="Duplication level graph"></p> -</div> -<div class="module"><h2 id="M9"><img src="warning.png" alt="[WARN]"> Overrepresented sequences</h2> -<table> -<tr> -<th>Sequence</th> -<th>Count</th> -<th>Percentage</th> -<th>Possible Source</th> -</tr> -<tr> -<td>CGGAAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT</td> -<td>7</td> -<td>0.13999999999999999</td> -<td>Illumina Paired End PCR Primer 2 (96% over 33bp)</td> -</tr> -<tr> -<td>CGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC</td> -<td>7</td> -<td>0.13999999999999999</td> -<td>Illumina Paired End PCR Primer 2 (100% over 35bp)</td> -</tr> -</table> -</div> -<div class="module"><h2 id="M10"><img src="error.png" alt="[FAIL]"> Kmer Content</h2> -<p><img class="indented" src="kmer_profiles.png" alt="Kmer graph"></p> -<table> -<tr> -<th>Sequence</th> -<th>Count</th> -<th>Obs/Exp Overall</th> -<th>Obs/Exp Max</th> -<th>Max Obs/Exp Position</th> -</tr> -<tr> -<td>CCCCC</td> -<td>1180</td> -<td>9.957459</td> -<td>29.638031</td> -<td>50</td> -</tr> -<tr> -<td>AAAAA</td> -<td>2175</td> -<td>4.133217</td> -<td>7.129659</td> -<td>47</td> -</tr> -<tr> -<td>CTCCC</td> -<td>555</td> -<td>3.668942</td> -<td>11.56272</td> -<td>11</td> -</tr> -<tr> -<td>CCTCC</td> -<td>525</td> -<td>3.4706206</td> -<td>11.56272</td> -<td>14</td> -</tr> -<tr> -<td>CTGGG</td> -<td>465</td> -<td>3.0945942</td> -<td>8.331139</td> -<td>39</td> -</tr> -<tr> -<td>GGGGG</td> -<td>350</td> -<td>2.9865708</td> -<td>12.818572</td> -<td>41</td> -</tr> -<tr> -<td>TGGAA</td> -<td>800</td> -<td>2.9261596</td> -<td>6.397646</td> -<td>17</td> -</tr> -<tr> -<td>CCCAG</td> -<td>455</td> -<td>2.855999</td> -<td>9.429343</td> -<td>40</td> -</tr> -<tr> -<td>GAATG</td> -<td>775</td> -<td>2.8347175</td> -<td>10.053445</td> -<td>20</td> -</tr> -<tr> -<td>GTGTG</td> -<td>530</td> -<td>2.763172</td> -<td>7.8240557</td> -<td>33</td> -</tr> -<tr> -<td>GGGAG</td> -<td>435</td> -<td>2.7487729</td> -<td>6.3220544</td> -<td>43</td> -</tr> -<tr> -<td>TGTGT</td> -<td>670</td> -<td>2.7303638</td> -<td>6.109576</td> -<td>27</td> -</tr> -<tr> -<td>ATGGA</td> -<td>735</td> -<td>2.688409</td> -<td>6.397646</td> -<td>20</td> -</tr> -<tr> -<td>GGAAT</td> -<td>730</td> -<td>2.6701207</td> -<td>7.3115954</td> -<td>19</td> -</tr> -<tr> -<td>GCTGG</td> -<td>400</td> -<td>2.6620166</td> -<td>8.322799</td> -<td>31</td> -</tr> -<tr> -<td>GGAGG</td> -<td>420</td> -<td>2.6539874</td> -<td>7.9104857</td> -<td>40</td> -</tr> -<tr> -<td>GCAGG</td> -<td>405</td> -<td>2.5535064</td> -<td>14.17877</td> -<td>16</td> -</tr> -<tr> -<td>CCTGG</td> -<td>375</td> -<td>2.4900866</td> -<td>6.6367774</td> -<td>7</td> -</tr> -<tr> -<td>CAGCC</td> -<td>390</td> -<td>2.4479992</td> -<td>6.279937</td> -<td>38</td> -</tr> -<tr> -<td>GGCTG</td> -<td>365</td> -<td>2.4290898</td> -<td>9.97737</td> -<td>24</td> -</tr> -<tr> -<td>TGGGA</td> -<td>490</td> -<td>2.4202447</td> -<td>7.40506</td> -<td>20</td> -</tr> -<tr> -<td>CCAGC</td> -<td>385</td> -<td>2.4166145</td> -<td>6.286229</td> -<td>41</td> -</tr> -<tr> -<td>AATGG</td> -<td>660</td> -<td>2.4140818</td> -<td>5.4836965</td> -<td>18</td> -</tr> -<tr> -<td>GCCTG</td> -<td>360</td> -<td>2.3904827</td> -<td>8.295971</td> -<td>5</td> -</tr> -<tr> -<td>GCCTC</td> -<td>360</td> -<td>2.3851626</td> -<td>6.6286345</td> -<td>31</td> -</tr> -<tr> -<td>CCCTC</td> -<td>360</td> -<td>2.379854</td> -<td>8.267352</td> -<td>34</td> -</tr> -<tr> -<td>CTGTG</td> -<td>450</td> -<td>2.3408678</td> -<td>9.09864</td> -<td>44</td> -</tr> -<tr> -<td>GGAAG</td> -<td>500</td> -<td>2.3397229</td> -<td>14.031037</td> -<td>2</td> -</tr> -<tr> -<td>CAGCA</td> -<td>500</td> -<td>2.32932</td> -<td>10.47649</td> -<td>14</td> -</tr> -<tr> -<td>CAGGA</td> -<td>495</td> -<td>2.3111706</td> -<td>13.99981</td> -<td>17</td> -</tr> -<tr> -<td>TCCCA</td> -<td>470</td> -<td>2.305994</td> -<td>7.370469</td> -<td>39</td> -</tr> -<tr> -<td>CTGCC</td> -<td>345</td> -<td>2.285781</td> -<td>8.277508</td> -<td>10</td> -</tr> -<tr> -<td>GGTGG</td> -<td>340</td> -<td>2.2677608</td> -<td>5.009832</td> -<td>42</td> -</tr> -<tr> -<td>CCAGG</td> -<td>360</td> -<td>2.264732</td> -<td>6.300251</td> -<td>41</td> -</tr> -<tr> -<td>TTCCT</td> -<td>555</td> -<td>2.2516627</td> -<td>7.0961456</td> -<td>1</td> -</tr> -<tr> -<td>TCCCC</td> -<td>335</td> -<td>2.2145865</td> -<td>8.267353</td> -<td>29</td> -</tr> -<tr> -<td>CAGGC</td> -<td>350</td> -<td>2.2018228</td> -<td>6.300251</td> -<td>42</td> -</tr> -<tr> -<td>CTCCT</td> -<td>425</td> -<td>2.2009897</td> -<td>6.4701333</td> -<td>15</td> -</tr> -<tr> -<td>GGCAG</td> -<td>340</td> -<td>2.1436844</td> -<td>6.301676</td> -<td>16</td> -</tr> -<tr> -<td>CCCCA</td> -<td>340</td> -<td>2.129403</td> -<td>6.26596</td> -<td>31</td> -</tr> -<tr> -<td>CTCTG</td> -<td>410</td> -<td>2.1280441</td> -<td>5.1928453</td> -<td>48</td> -</tr> -<tr> -<td>TGGTG</td> -<td>405</td> -<td>2.1114805</td> -<td>6.520046</td> -<td>33</td> -</tr> -<tr> -<td>TTCCA</td> -<td>545</td> -<td>2.094778</td> -<td>6.7295837</td> -<td>33</td> -</tr> -<tr> -<td>CCCCT</td> -<td>315</td> -<td>2.0823722</td> -<td>6.607268</td> -<td>12</td> -</tr> -<tr> -<td>CTCAG</td> -<td>420</td> -<td>2.0652719</td> -<td>6.149596</td> -<td>46</td> -</tr> -<tr> -<td>AGGGA</td> -<td>440</td> -<td>2.0589561</td> -<td>7.0225415</td> -<td>31</td> -</tr> -<tr> -<td>CAGAG</td> -<td>440</td> -<td>2.054374</td> -<td>5.8390937</td> -<td>38</td> -</tr> -<tr> -<td>AGCAG</td> -<td>440</td> -<td>2.0543735</td> -<td>10.499857</td> -<td>15</td> -</tr> -<tr> -<td>CCCTG</td> -<td>310</td> -<td>2.05389</td> -<td>6.622006</td> -<td>24</td> -</tr> -<tr> -<td>CTTCC</td> -<td>390</td> -<td>2.0197318</td> -<td>6.4701333</td> -<td>17</td> -</tr> -<tr> -<td>AGGAA</td> -<td>580</td> -<td>2.0098667</td> -<td>10.390455</td> -<td>18</td> -</tr> -<tr> -<td>AGAGC</td> -<td>430</td> -<td>2.0076835</td> -<td>10.499858</td> -<td>5</td> -</tr> -<tr> -<td>TCTCC</td> -<td>385</td> -<td>1.9938378</td> -<td>5.181288</td> -<td>29</td> -</tr> -<tr> -<td>TCCTC</td> -<td>385</td> -<td>1.9938378</td> -<td>5.181288</td> -<td>48</td> -</tr> -<tr> -<td>TCAGC</td> -<td>405</td> -<td>1.9915122</td> -<td>12.286894</td> -<td>44</td> -</tr> -<tr> -<td>TGCTG</td> -<td>380</td> -<td>1.9767327</td> -<td>6.5055346</td> -<td>47</td> -</tr> -<tr> -<td>CACCC</td> -<td>315</td> -<td>1.9728295</td> -<td>6.259694</td> -<td>9</td> -</tr> -<tr> -<td>TCCTG</td> -<td>380</td> -<td>1.9723336</td> -<td>6.4845653</td> -<td>8</td> -</tr> -<tr> -<td>CAGGG</td> -<td>310</td> -<td>1.954536</td> -<td>6.3016763</td> -<td>21</td> -</tr> -<tr> -<td>GATGG</td> -<td>395</td> -<td>1.9510134</td> -<td>6.1708827</td> -<td>1</td> -</tr> -<tr> -<td>TGGCT</td> -<td>375</td> -<td>1.9507233</td> -<td>9.098641</td> -<td>45</td> -</tr> -<tr> -<td>AAGAG</td> -<td>560</td> -<td>1.9405607</td> -<td>9.524584</td> -<td>4</td> -</tr> -<tr> -<td>TGTGG</td> -<td>370</td> -<td>1.929007</td> -<td>6.5200467</td> -<td>30</td> -</tr> -<tr> -<td>CTGAG</td> -<td>390</td> -<td>1.9220302</td> -<td>6.163313</td> -<td>35</td> -</tr> -<tr> -<td>CCTGT</td> -<td>370</td> -<td>1.9204301</td> -<td>6.4845653</td> -<td>6</td> -</tr> -<tr> -<td>CAGAA</td> -<td>555</td> -<td>1.9189543</td> -<td>6.0476103</td> -<td>6</td> -</tr> -<tr> -<td>TCCCT</td> -<td>370</td> -<td>1.9161558</td> -<td>6.4766097</td> -<td>33</td> -</tr> -<tr> -<td>CCCAC</td> -<td>305</td> -<td>1.9101999</td> -<td>6.259694</td> -<td>4</td> -</tr> -<tr> -<td>CACCA</td> -<td>405</td> -<td>1.8825499</td> -<td>6.9757566</td> -<td>33</td> -</tr> -<tr> -<td>AAAGA</td> -<td>730</td> -<td>1.8732982</td> -<td>5.1399345</td> -<td>42</td> -</tr> -<tr> -<td>CAGTG</td> -<td>380</td> -<td>1.8727474</td> -<td>6.163313</td> -<td>30</td> -</tr> -<tr> -<td>GAAGA</td> -<td>540</td> -<td>1.8712552</td> -<td>7.792842</td> -<td>26</td> -</tr> -<tr> -<td>TCTCT</td> -<td>460</td> -<td>1.8662432</td> -<td>5.068676</td> -<td>8</td> -</tr> -<tr> -<td>TTTCC</td> -<td>460</td> -<td>1.8662429</td> -<td>5.073749</td> -<td>38</td> -</tr> -<tr> -<td>GAGGC</td> -<td>295</td> -<td>1.8599615</td> -<td>6.301676</td> -<td>22</td> -</tr> -<tr> -<td>TCTGT</td> -<td>455</td> -<td>1.8500755</td> -<td>5.0850673</td> -<td>49</td> -</tr> -<tr> -<td>CCTGC</td> -<td>275</td> -<td>1.8219992</td> -<td>9.93301</td> -<td>6</td> -</tr> -<tr> -<td>CCTCT</td> -<td>350</td> -<td>1.8125799</td> -<td>7.7641597</td> -<td>2</td> -</tr> -<tr> -<td>TGCCT</td> -<td>345</td> -<td>1.7906713</td> -<td>5.187652</td> -<td>12</td> -</tr> -<tr> -<td>TTCCC</td> -<td>345</td> -<td>1.7866857</td> -<td>6.470133</td> -<td>18</td> -</tr> -<tr> -<td>GAGGG</td> -<td>280</td> -<td>1.769325</td> -<td>6.3283887</td> -<td>41</td> -</tr> -<tr> -<td>CACAC</td> -<td>380</td> -<td>1.7663432</td> -<td>5.813131</td> -<td>33</td> -</tr> -<tr> -<td>TCTGC</td> -<td>340</td> -<td>1.7647195</td> -<td>5.1980486</td> -<td>42</td> -</tr> -<tr> -<td>CTGGC</td> -<td>265</td> -<td>1.7596608</td> -<td>6.6434207</td> -<td>43</td> -</tr> -<tr> -<td>TTCAG</td> -<td>455</td> -<td>1.7527524</td> -<td>9.6255</td> -<td>12</td> -</tr> -<tr> -<td>AGCCA</td> -<td>375</td> -<td>1.74699</td> -<td>5.8319354</td> -<td>39</td> -</tr> -<tr> -<td>CTCTC</td> -<td>335</td> -<td>1.7348979</td> -<td>5.1761065</td> -<td>3</td> -</tr> -<tr> -<td>GGGTG</td> -<td>260</td> -<td>1.7341703</td> -<td>8.333022</td> -<td>28</td> -</tr> -<tr> -<td>TGGGG</td> -<td>260</td> -<td>1.7341703</td> -<td>8.349721</td> -<td>39</td> -</tr> -<tr> -<td>GTGGG</td> -<td>255</td> -<td>1.7008208</td> -<td>6.6730905</td> -<td>31</td> -</tr> -<tr> -<td>GGCCA</td> -<td>270</td> -<td>1.698549</td> -<td>6.293945</td> -<td>43</td> -</tr> -<tr> -<td>GCCCC</td> -<td>200</td> -<td>1.6914694</td> -<td>6.3460584</td> -<td>32</td> -</tr> -<tr> -<td>CTTTG</td> -<td>415</td> -<td>1.6874313</td> -<td>5.0799813</td> -<td>2</td> -</tr> -<tr> -<td>ACACA</td> -<td>485</td> -<td>1.6731915</td> -<td>5.1721287</td> -<td>14</td> -</tr> -<tr> -<td>GTGGT</td> -<td>320</td> -<td>1.6683302</td> -<td>5.216037</td> -<td>31</td> -</tr> -<tr> -<td>CTCAC</td> -<td>340</td> -<td>1.6681659</td> -<td>7.363092</td> -<td>31</td> -</tr> -<tr> -<td>TGCTT</td> -<td>410</td> -<td>1.6671008</td> -<td>5.090162</td> -<td>40</td> -</tr> -<tr> -<td>GGGGC</td> -<td>195</td> -<td>1.6602434</td> -<td>8.526694</td> -<td>40</td> -</tr> -<tr> -<td>AGTGG</td> -<td>335</td> -<td>1.654657</td> -<td>6.1708827</td> -<td>3</td> -</tr> -<tr> -<td>TTCTG</td> -<td>405</td> -<td>1.6467704</td> -<td>5.0850663</td> -<td>49</td> -</tr> -<tr> -<td>AGAAG</td> -<td>475</td> -<td>1.6460115</td> -<td>5.1952276</td> -<td>22</td> -</tr> -<tr> -<td>ACTCC</td> -<td>335</td> -<td>1.6436341</td> -<td>6.1297736</td> -<td>10</td> -</tr> -<tr> -<td>GGCTC</td> -<td>245</td> -<td>1.6268562</td> -<td>8.304275</td> -<td>46</td> -</tr> -<tr> -<td>TGGCA</td> -<td>330</td> -<td>1.6263331</td> -<td>8.637284</td> -<td>40</td> -</tr> -<tr> -<td>TCCTT</td> -<td>400</td> -<td>1.6228201</td> -<td>6.0946</td> -<td>40</td> -</tr> -<tr> -<td>TCTGG</td> -<td>310</td> -<td>1.612598</td> -<td>5.204428</td> -<td>43</td> -</tr> -<tr> -<td>GGGGA</td> -<td>255</td> -<td>1.6113497</td> -<td>6.3157325</td> -<td>7</td> -</tr> -<tr> -<td>CTGCT</td> -<td>310</td> -<td>1.609009</td> -<td>6.4845653</td> -<td>3</td> -</tr> -<tr> -<td>CCCAA</td> -<td>345</td> -<td>1.6036536</td> -<td>5.8073177</td> -<td>10</td> -</tr> -<tr> -<td>TGGCC</td> -<td>240</td> -<td>1.5936551</td> -<td>6.6434207</td> -<td>49</td> -</tr> -<tr> -<td>GTGCT</td> -<td>305</td> -<td>1.5865883</td> -<td>5.220104</td> -<td>50</td> -</tr> -<tr> -<td>GCTTT</td> -<td>390</td> -<td>1.5857788</td> -<td>6.1081944</td> -<td>41</td> -</tr> -<tr> -<td>CCACA</td> -<td>335</td> -<td>1.5571709</td> -<td>5.813131</td> -<td>30</td> -</tr> -<tr> -<td>CCTTC</td> -<td>300</td> -<td>1.5536399</td> -<td>6.4701333</td> -<td>17</td> -</tr> -<tr> -<td>CCACT</td> -<td>315</td> -<td>1.5455065</td> -<td>6.135909</td> -<td>32</td> -</tr> -<tr> -<td>TCTTC</td> -<td>380</td> -<td>1.5416791</td> -<td>5.0737495</td> -<td>49</td> -</tr> -<tr> -<td>GTTCA</td> -<td>400</td> -<td>1.5408814</td> -<td>7.700401</td> -<td>11</td> -</tr> -<tr> -<td>AGGCA</td> -<td>330</td> -<td>1.5407803</td> -<td>5.8332543</td> -<td>6</td> -</tr> -<tr> -<td>AAAAG</td> -<td>600</td> -<td>1.5396972</td> -<td>5.782427</td> -<td>41</td> -</tr> -<tr> -<td>GCACA</td> -<td>330</td> -<td>1.5373511</td> -<td>5.8202715</td> -<td>18</td> -</tr> -<tr> -<td>ATGCC</td> -<td>305</td> -<td>1.4997808</td> -<td>12.286893</td> -<td>22</td> -</tr> -<tr> -<td>GAAGG</td> -<td>320</td> -<td>1.4974226</td> -<td>5.8462653</td> -<td>8</td> -</tr> -<tr> -<td>GAGAG</td> -<td>320</td> -<td>1.4974226</td> -<td>5.857981</td> -<td>41</td> -</tr> -<tr> -<td>TGTGC</td> -<td>285</td> -<td>1.4825499</td> -<td>5.2044287</td> -<td>29</td> -</tr> -<tr> -<td>TTGGC</td> -<td>285</td> -<td>1.4825495</td> -<td>5.199223</td> -<td>15</td> -</tr> -<tr> -<td>GGGAT</td> -<td>300</td> -<td>1.4817826</td> -<td>7.40506</td> -<td>21</td> -</tr> -<tr> -<td>AGCTG</td> -<td>300</td> -<td>1.4784846</td> -<td>6.1633124</td> -<td>30</td> -</tr> -<tr> -<td>AACAG</td> -<td>425</td> -<td>1.4694693</td> -<td>5.1836653</td> -<td>10</td> -</tr> -<tr> -<td>GAGTG</td> -<td>295</td> -<td>1.4570862</td> -<td>6.1770606</td> -<td>33</td> -</tr> -<tr> -<td>GGGAC</td> -<td>230</td> -<td>1.4501395</td> -<td>6.3143044</td> -<td>40</td> -</tr> -<tr> -<td>GTGTT</td> -<td>355</td> -<td>1.4466851</td> -<td>6.134112</td> -<td>50</td> -</tr> -<tr> -<td>TTTGG</td> -<td>355</td> -<td>1.4466851</td> -<td>6.1095753</td> -<td>3</td> -</tr> -<tr> -<td>TCTTT</td> -<td>455</td> -<td>1.4461157</td> -<td>5.5590916</td> -<td>1</td> -</tr> -<tr> -<td>GAGAT</td> -<td>395</td> -<td>1.4447913</td> -<td>6.397646</td> -<td>27</td> -</tr> -<tr> -<td>CAAAA</td> -<td>560</td> -<td>1.4338523</td> -<td>5.123362</td> -<td>31</td> -</tr> -<tr> -<td>GGTTC</td> -<td>275</td> -<td>1.4305303</td> -<td>10.398446</td> -<td>10</td> -</tr> -<tr> -<td>CCCTT</td> -<td>275</td> -<td>1.4241698</td> -<td>5.186479</td> -<td>39</td> -</tr> -<tr> -<td>CTGTT</td> -<td>350</td> -<td>1.4231348</td> -<td>5.0799813</td> -<td>10</td> -</tr> -<tr> -<td>ATGGT</td> -<td>365</td> -<td>1.4091904</td> -<td>6.7596393</td> -<td>47</td> -</tr> -<tr> -<td>TGTTG</td> -<td>345</td> -<td>1.4059336</td> -<td>5.1015162</td> -<td>40</td> -</tr> -<tr> -<td>CTGTC</td> -<td>270</td> -<td>1.4013947</td> -<td>5.198048</td> -<td>39</td> -</tr> -<tr> -<td>GAGAC</td> -<td>300</td> -<td>1.4007094</td> -<td>5.856681</td> -<td>50</td> -</tr> -<tr> -<td>CTTCT</td> -<td>345</td> -<td>1.3996824</td> -<td>7.1246448</td> -<td>50</td> -</tr> -<tr> -<td>GGCCC</td> -<td>165</td> -<td>1.398575</td> -<td>6.353853</td> -<td>2</td> -</tr> -<tr> -<td>TGAGT</td> -<td>360</td> -<td>1.3898867</td> -<td>5.7939773</td> -<td>32</td> -</tr> -<tr> -<td>GGCAC</td> -<td>220</td> -<td>1.3840029</td> -<td>6.2876506</td> -<td>17</td> -</tr> -<tr> -<td>CCTTT</td> -<td>340</td> -<td>1.3793972</td> -<td>5.068676</td> -<td>8</td> -</tr> -<tr> -<td>CCTTG</td> -<td>265</td> -<td>1.3754432</td> -<td>5.187652</td> -<td>18</td> -</tr> -<tr> -<td>TTGAA</td> -<td>475</td> -<td>1.3580486</td> -<td>6.4295163</td> -<td>7</td> -</tr> -<tr> -<td>GAGCG</td> -<td>215</td> -<td>1.3555653</td> -<td>12.603353</td> -<td>6</td> -</tr> -<tr> -<td>AAGGA</td> -<td>390</td> -<td>1.3514621</td> -<td>5.1952276</td> -<td>44</td> -</tr> -<tr> -<td>TTCTT</td> -<td>420</td> -<td>1.3348758</td> -<td>7.941558</td> -<td>4</td> -</tr> -<tr> -<td>GGGGT</td> -<td>200</td> -<td>1.3339773</td> -<td>8.333022</td> -<td>45</td> -</tr> -<tr> -<td>CAGAT</td> -<td>365</td> -<td>1.3320893</td> -<td>5.4769697</td> -<td>34</td> -</tr> -<tr> -<td>CTTGG</td> -<td>255</td> -<td>1.3264918</td> -<td>5.1992235</td> -<td>18</td> -</tr> -<tr> -<td>TGGTT</td> -<td>320</td> -<td>1.3040541</td> -<td>5.091313</td> -<td>25</td> -</tr> -<tr> -<td>TTGGG</td> -<td>250</td> -<td>1.3033829</td> -<td>6.5135255</td> -<td>6</td> -</tr> -<tr> -<td>CTGGT</td> -<td>250</td> -<td>1.3004823</td> -<td>5.204428</td> -<td>48</td> -</tr> -<tr> -<td>GCTCC</td> -<td>195</td> -<td>1.2919631</td> -<td>8.277508</td> -<td>26</td> -</tr> -<tr> -<td>TGATG</td> -<td>330</td> -<td>1.2740628</td> -<td>5.7939773</td> -<td>46</td> -</tr> -<tr> -<td>TGTCC</td> -<td>245</td> -<td>1.2716361</td> -<td>5.187652</td> -<td>21</td> -</tr> -<tr> -<td>GGCTT</td> -<td>240</td> -<td>1.2484628</td> -<td>5.199223</td> -<td>4</td> -</tr> -<tr> -<td>GACAG</td> -<td>265</td> -<td>1.2372932</td> -<td>5.833254</td> -<td>27</td> -</tr> -<tr> -<td>GGTGT</td> -<td>235</td> -<td>1.2251799</td> -<td>5.21082</td> -<td>27</td> -</tr> -<tr> -<td>AATGC</td> -<td>335</td> -<td>1.2226022</td> -<td>10.031068</td> -<td>21</td> -</tr> -<tr> -<td>TTTGC</td> -<td>300</td> -<td>1.2198299</td> -<td>5.0799813</td> -<td>9</td> -</tr> -<tr> -<td>GTCCT</td> -<td>230</td> -<td>1.1937809</td> -<td>5.1928453</td> -<td>47</td> -</tr> -<tr> -<td>GGGCC</td> -<td>140</td> -<td>1.1893166</td> -<td>6.3744006</td> -<td>43</td> -</tr> -<tr> -<td>ATCCC</td> -<td>240</td> -<td>1.1775287</td> -<td>6.135909</td> -<td>43</td> -</tr> -<tr> -<td>GCTCT</td> -<td>225</td> -<td>1.1678292</td> -<td>7.789268</td> -<td>47</td> -</tr> -<tr> -<td>AGCCC</td> -<td>185</td> -<td>1.1612303</td> -<td>6.2799363</td> -<td>31</td> -</tr> -<tr> -<td>GATCG</td> -<td>235</td> -<td>1.1581463</td> -<td>6.1633124</td> -<td>29</td> -</tr> -<tr> -<td>ACCCT</td> -<td>230</td> -<td>1.128465</td> -<td>6.129773</td> -<td>10</td> -</tr> -<tr> -<td>GTTGG</td> -<td>215</td> -<td>1.1209095</td> -<td>5.2160373</td> -<td>47</td> -</tr> -<tr> -<td>AGCTC</td> -<td>225</td> -<td>1.1063956</td> -<td>6.1434464</td> -<td>25</td> -</tr> -<tr> -<td>CCCAT</td> -<td>225</td> -<td>1.1039332</td> -<td>6.129773</td> -<td>21</td> -</tr> -<tr> -<td>CGGAA</td> -<td>235</td> -<td>1.0972222</td> -<td>9.333206</td> -<td>1</td> -</tr> -<tr> -<td>TCTTG</td> -<td>265</td> -<td>1.0775164</td> -<td>5.0799813</td> -<td>21</td> -</tr> -<tr> -<td>ATGCA</td> -<td>295</td> -<td>1.0766199</td> -<td>5.4714913</td> -<td>37</td> -</tr> -<tr> -<td>GCTTG</td> -<td>205</td> -<td>1.0663953</td> -<td>5.199223</td> -<td>2</td> -</tr> -<tr> -<td>AGCGG</td> -<td>165</td> -<td>1.0403174</td> -<td>12.603352</td> -<td>7</td> -</tr> -<tr> -<td>TTGCC</td> -<td>200</td> -<td>1.0380702</td> -<td>5.1876516</td> -<td>3</td> -</tr> -<tr> -<td>AACCT</td> -<td>285</td> -<td>1.0378094</td> -<td>5.4593143</td> -<td>13</td> -</tr> -<tr> -<td>AACCA</td> -<td>300</td> -<td>1.0349638</td> -<td>5.1721287</td> -<td>22</td> -</tr> -<tr> -<td>CCGAG</td> -<td>160</td> -<td>1.0065476</td> -<td>12.575301</td> -<td>25</td> -</tr> -<tr> -<td>GTTCC</td> -<td>190</td> -<td>0.9861668</td> -<td>6.4845653</td> -<td>27</td> -</tr> -<tr> -<td>ACTCA</td> -<td>270</td> -<td>0.983188</td> -<td>5.4593153</td> -<td>11</td> -</tr> -<tr> -<td>CTCAT</td> -<td>255</td> -<td>0.9801258</td> -<td>5.7624474</td> -<td>4</td> -</tr> -<tr> -<td>GAACC</td> -<td>210</td> -<td>0.9783144</td> -<td>5.820272</td> -<td>25</td> -</tr> -<tr> -<td>GGCGG</td> -<td>110</td> -<td>0.93654746</td> -<td>10.637051</td> -<td>44</td> -</tr> -<tr> -<td>GCGGG</td> -<td>110</td> -<td>0.93654746</td> -<td>6.3886194</td> -<td>36</td> -</tr> -<tr> -<td>ATCGG</td> -<td>190</td> -<td>0.93637353</td> -<td>6.163312</td> -<td>30</td> -</tr> -<tr> -<td>GTCTG</td> -<td>180</td> -<td>0.9363471</td> -<td>5.2096424</td> -<td>41</td> -</tr> -<tr> -<td>GCGGT</td> -<td>140</td> -<td>0.93170583</td> -<td>13.303162</td> -<td>8</td> -</tr> -<tr> -<td>CGGGG</td> -<td>105</td> -<td>0.8939771</td> -<td>6.3886194</td> -<td>46</td> -</tr> -<tr> -<td>GGGCG</td> -<td>105</td> -<td>0.8939771</td> -<td>8.518159</td> -<td>43</td> -</tr> -<tr> -<td>TCGGA</td> -<td>170</td> -<td>0.83780795</td> -<td>7.395975</td> -<td>31</td> -</tr> -<tr> -<td>CTTGT</td> -<td>205</td> -<td>0.83355045</td> -<td>5.0850673</td> -<td>38</td> -</tr> -<tr> -<td>TGCCG</td> -<td>125</td> -<td>0.83002883</td> -<td>14.93275</td> -<td>23</td> -</tr> -<tr> -<td>AGGCG</td> -<td>125</td> -<td>0.7881193</td> -<td>6.3016763</td> -<td>15</td> -</tr> -<tr> -<td>CGGTT</td> -<td>150</td> -<td>0.78028923</td> -<td>10.398446</td> -<td>9</td> -</tr> -<tr> -<td>GTGAC</td> -<td>150</td> -<td>0.7392424</td> -<td>6.163313</td> -<td>32</td> -</tr> -<tr> -<td>GCCGA</td> -<td>115</td> -<td>0.723456</td> -<td>12.575301</td> -<td>24</td> -</tr> -<tr> -<td>CCCGC</td> -<td>85</td> -<td>0.7188745</td> -<td>6.3460584</td> -<td>30</td> -</tr> -<tr> -<td>CCCCG</td> -<td>85</td> -<td>0.7188745</td> -<td>10.576764</td> -<td>29</td> -</tr> -<tr> -<td>CGAGA</td> -<td>135</td> -<td>0.6303192</td> -<td>9.333206</td> -<td>26</td> -</tr> -<tr> -<td>CGGGA</td> -<td>90</td> -<td>0.5674459</td> -<td>6.301676</td> -<td>24</td> -</tr> -<tr> -<td>CACGG</td> -<td>85</td> -<td>0.5347284</td> -<td>6.2876506</td> -<td>37</td> -</tr> -<tr> -<td>CGCCT</td> -<td>80</td> -<td>0.5300361</td> -<td>6.6286345</td> -<td>30</td> -</tr> -<tr> -<td>CCGCA</td> -<td>75</td> -<td>0.47076905</td> -<td>6.2799363</td> -<td>36</td> -</tr> -<tr> -<td>CGTTG</td> -<td>40</td> -<td>0.20807713</td> -<td>5.2044277</td> -<td>46</td> -</tr> -</table> -</div> -</body></html><div class="module"><h2>Files created by FastQC</h2><table cellspacing="2" cellpadding="2"> -<tr><td><a href="1000gsample_fastqc.zip">1000gsample_fastqc.zip (312.3 KB)</a></td></tr> -<tr><td><a href="duplication_levels.png">duplication_levels.png (14.5 KB)</a></td></tr> -<tr><td><a href="fastqc_data.txt">fastqc_data.txt (15.0 KB)</a></td></tr> -<tr><td><a href="fastqc_report.html">fastqc_report.html (25.3 KB)</a></td></tr> -<tr><td><a href="kmer_profiles.png">kmer_profiles.png (186.7 KB)</a></td></tr> -<tr><td><a href="per_base_gc_content.png">per_base_gc_content.png (12.1 KB)</a></td></tr> -<tr><td><a href="per_base_n_content.png">per_base_n_content.png (7.4 KB)</a></td></tr> -<tr><td><a href="per_base_quality.png">per_base_quality.png (9.6 KB)</a></td></tr> -<tr><td><a href="per_base_sequence_content.png">per_base_sequence_content.png (23.9 KB)</a></td></tr> -<tr><td><a href="per_sequence_gc_content.png">per_sequence_gc_content.png (29.6 KB)</a></td></tr> -<tr><td><a href="per_sequence_quality.png">per_sequence_quality.png (21.9 KB)</a></td></tr> -<tr><td><a href="rgFastQCmsd1Ke.log">rgFastQCmsd1Ke.log (1.3 KB)</a></td></tr> -<tr><td><a href="sequence_length_distribution.png">sequence_length_distribution.png (18.8 KB)</a></td></tr> -<tr><td><a href="summary.txt">summary.txt (509 B)</a></td></tr> -</table> -<a href="http://www.bioinformatics.bbsrc.ac.uk/projects/fastqc/">FastQC documentation and full attribution is here</a><br/><hr/> -FastQC was run by Galaxy using the rgenetics rgFastQC wrapper - see http://rgenetics.org for details and licensing -</div></div><div class="footer">Produced by <a href="http://www.bioinformatics.babraham.ac.uk/projects/fastqc/">FastQC</a> (version 0.10.1)</div>