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view tool_dependencies.xml @ 2:2611a96c30b7 draft

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author iuc
date Sat, 18 Jan 2014 22:33:36 -0500
parents 39b1c10532a4
children 5fb45d8bbc07
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<?xml version="1.0"?>
<tool_dependency>
    <package name="fastqc_dist_0_10_1" version="0.10.1">
        <install version="1.0">
            <actions>
                <action type="download_by_url">http://www.bioinformatics.babraham.ac.uk/projects/fastqc/fastqc_v0.10.1.zip</action>
                <action type="move_directory_files">
                    <source_directory>../FastQC</source_directory>
                    <destination_directory>$INSTALL_DIR/fastqc_dist</destination_directory>
                </action>                
                <action type="shell_command">chmod ugo+x $INSTALL_DIR/fastqc_dist/fastqc</action>
                <action type="set_environment">
                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/fastqc_dist</environment_variable>
                </action>
            </actions>
        </install>
    </package>
</tool_dependency>