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comparison fastqe.xml @ 1:8d3aff8ba8ad draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastqe commit acc3e75aff3a12ee82d03fbfe676ec81d5451c6e"
author iuc
date Mon, 20 Jul 2020 08:04:02 -0400
parents ece21607a21d
children a252d8415583
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0:ece21607a21d 1:8d3aff8ba8ad
1 <tool id="fastqe" name="FASTQE" version="0.1.1"> 1 <tool id="fastqe" name="FASTQE" version="0.2.6">
2 <description>visualize fastq files with emoji's 🧬😎</description> 2 <description>visualize fastq files with emoji's 🧬😎</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="0.1.1">fastqe</requirement> 4 <requirement type="package" version="0.2.6">fastqe</requirement>
5 </requirements> 5 </requirements>
6 <command detect_errors="exit_code"> 6 <command detect_errors="exit_code">
7 <![CDATA[ 7 <![CDATA[
8 8
9 #for i in $input: 9 #for i in $input:
14 14
15 fastqe 15 fastqe
16 --mean 16 --mean
17 $bin 17 $bin
18 --min 18 --min
19 --long $long
19 --max 20 --max
20 #for i in $input: 21 #for i in $input:
21 '$i.element_identifier' 22 '$i.element_identifier'
22 #end for 23 #end for
23 | sed 's/$/<br>/;s/^\([^\t]*\)\t\([^\t]*\)\t/<h2>\1: \2<\/h2>\n/' >> '$output' && 24 | sed 's/$/<br>/;s/^\([^\t]*\)\t\([^\t]*\)\t/<h2>\1: \2<\/h2>\n/' >> '$output' &&
25 echo "</body></html>" >> '$output' 26 echo "</body></html>" >> '$output'
26 ]]></command> 27 ]]></command>
27 <inputs> 28 <inputs>
28 <param label="FastQ data" name="input" type="data" format="fastq" multiple="true"/> 29 <param label="FastQ data" name="input" type="data" format="fastq" multiple="true"/>
29 <param label="Bin scores" name="bin" type="boolean" truevalue="--bin" falsevalue="" /> 30 <param label="Bin scores" name="bin" type="boolean" truevalue="--bin" falsevalue="" />
31 <param label="Maximum read length" name="long" type="integer" help="Enable long reads up to this many bp long." min="1" value="500"/>
30 </inputs> 32 </inputs>
31 <outputs> 33 <outputs>
32 <data format="html" name="output"/> 34 <data format="html" name="output"/>
33 </outputs> 35 </outputs>
34 <tests> 36 <tests>