Mercurial > repos > iuc > fasttree
comparison fasttree.xml @ 4:bc939965ce41 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fasttree commit a90964e5fc45313b74753e1686575102475825b0
| author | iuc |
|---|---|
| date | Mon, 16 Dec 2024 13:33:53 +0000 |
| parents | 3aa7c6da1696 |
| children |
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| 3:3aa7c6da1696 | 4:bc939965ce41 |
|---|---|
| 88 <param format="nhx" name="start_tree" type="data" label="Newick file" multiple="false" help="The tree produced by the full alignment to be used as a starting point for each bootstrapping replicate. This will save considerable computation time." /> | 88 <param format="nhx" name="start_tree" type="data" label="Newick file" multiple="false" help="The tree produced by the full alignment to be used as a starting point for each bootstrapping replicate. This will save considerable computation time." /> |
| 89 </when> | 89 </when> |
| 90 </conditional> | 90 </conditional> |
| 91 </when> | 91 </when> |
| 92 </conditional> | 92 </conditional> |
| 93 <param name="save_logfile" type="boolean" truevalue="" falsevalue="" checked="false" label="Save log file output" /> | 93 <param name="save_logfile" type="boolean" checked="false" label="Save log file output" /> |
| 94 <conditional name="model_selector"> | 94 <conditional name="model_selector"> |
| 95 <param name="format" type="select" label="Protein or nucleotide alignment" help="Specify if the aligned sequences are nucleotide or protein sequences"> | 95 <param name="format" type="select" label="Protein or nucleotide alignment" help="Specify if the aligned sequences are nucleotide or protein sequences"> |
| 96 <option value="-nt">Nucleotide</option> | 96 <option value="-nt">Nucleotide</option> |
| 97 <option value="" selected="true">Protein</option> | 97 <option value="" selected="true">Protein</option> |
| 98 </param> | 98 </param> |
| 152 <param name="format" value="-nt" /> | 152 <param name="format" value="-nt" /> |
| 153 <param name="save_logfile" value="true" /> | 153 <param name="save_logfile" value="true" /> |
| 154 <output name="output" file="tree.nhx" ftype="nhx" lines_diff="2" /> | 154 <output name="output" file="tree.nhx" ftype="nhx" lines_diff="2" /> |
| 155 <output name="log" file="log.txt" ftype="txt" compare="contains" /> | 155 <output name="log" file="log.txt" ftype="txt" compare="contains" /> |
| 156 </test> | 156 </test> |
| 157 <test expect_num_outputs="1"> | |
| 158 <param name="select_format" value="fasta" /> | |
| 159 <param name="model" value="" /> | |
| 160 <param name="input" value="aligned.fasta" /> | |
| 161 <param name="format" value="-nt" /> | |
| 162 <output name="output" file="tree.nhx" ftype="nhx" lines_diff="2" /> | |
| 163 </test> | |
| 157 </tests> | 164 </tests> |
| 158 <help> | 165 <help> |
| 159 <![CDATA[ | 166 <![CDATA[ |
| 160 | 167 |
| 161 =========== | 168 =========== |