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comparison featurecounts.xml @ 15:a8dc8dabf0f3 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/featurecounts commit e10bdc912c2628796487886c00b70318a6214c5e
author iuc
date Sat, 09 Jun 2018 14:36:14 -0400
parents 85aaf50ad9dc
children 8ce1e2c7ee72
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14:85aaf50ad9dc 15:a8dc8dabf0f3
554 497097 chr1 3204563 3207049 - 554 497097 chr1 3204563 3207049 -
555 497097 chr1 3411783 3411982 - 555 497097 chr1 3411783 3411982 -
556 497097 chr1 3660633 3661579 - 556 497097 chr1 3660633 3661579 -
557 ====== ==== ======= ======= ====== 557 ====== ==== ======= ======= ======
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559 These annotation files can be found in the `Subread package`_. You can see the version of Subread used by this wrapper in the tool form above under `Options > Requirements`. To create the files, the annotations were downloaded from NCBI RefSeq database and then adapted by merging overlapping exons from the same gene to form a set of disjoint exons for each gene. Genes with the same Entrez gene identifiers were also merged into one gene. See the `Subread User's Guide`_ for more information. 559 These annotation files can be found in the `Subread package`_. You can see the version of Subread used by this wrapper in the tool form above under `Options > Requirements`. To create the files, the annotations were downloaded from NCBI RefSeq database and then adapted by merging overlapping exons from the same gene to form a set of disjoint exons for each gene. Genes with the same Entrez gene identifiers were also merged into one gene. See the `Subread User's Guide`_ for more information. Gene names can be obtained for these Entrez identifiers with the Galaxy **annotateMyIDs** tool.
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561 Output format 561 Output format
562 ------------- 562 -------------
563 FeatureCounts produces a table containing counted reads, per gene, per row. Optionally the last column can be set to be the effective gene-length. These tables are compatible with the DESeq2, edgeR and limma-voom Galaxy wrappers by IUC. 563 FeatureCounts produces a table containing counted reads, per gene, per row. Optionally the last column can be set to be the effective gene-length. These tables are compatible with the DESeq2, edgeR and limma-voom Galaxy wrappers by IUC.
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