Mercurial > repos > iuc > featurecounts

diff featurecounts.xml @ 18:d60b1c4e0347 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/featurecounts commit b467fdf3fabeed440dcb596108fc792d44e7d8d9
author iuc
date Wed, 04 Jul 2018 17:32:47 -0400
parents 8ce1e2c7ee72
children f3a5f075498f
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--- a/featurecounts.xml	Wed Jun 20 05:32:55 2018 -0400
+++ b/featurecounts.xml	Wed Jul 04 17:32:47 2018 -0400
@@ -1,7 +1,7 @@
-<tool id="featurecounts" name="featureCounts" version="1.6.0.7" profile="16.04">
+<tool id="featurecounts" name="featureCounts" version="1.6.1.0" profile="16.04">
     <description>Measure gene expression in RNA-Seq experiments from SAM or BAM files.</description>
     <requirements>
-        <requirement type="package" version="1.6.0">subread</requirement>
+        <requirement type="package" version="1.6.1">subread</requirement>
         <requirement type="package" version="1.7">samtools</requirement>
     </requirements>
 
@@ -545,6 +545,16 @@
                 <metadata name="column_names" value="Status,featureCounts_input1.bam"/>
             </output>
         </test>
+        <!-- Ensure BAM output works -->
+        <test>
+            <param name="alignment" value="subset.sorted.bam" ftype="bam" />
+            <param name="anno_select" value="history" />
+            <param name="reference_gene_sets" value="small.gtf" ftype="gtf" />
+            <section name="extended_parameters" >
+                <param name="R" value="true" />
+            </section>
+            <output name="output_bam" value="subset.sorted.featurecounts.bam" />
+        </test>
     </tests>
 
     <help><![CDATA[