Mercurial > repos > iuc > featurecounts
changeset 28:7db9d3ea71c9 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/featurecounts commit 6ad844a722ddf6a71cae4c77bc43d3051376d891"
| author | iuc |
|---|---|
| date | Mon, 30 Aug 2021 13:47:52 +0000 |
| parents | ce44c6f2ba38 |
| children | 38b6d12edc68 |
| files | featurecounts.xml |
| diffstat | 1 files changed, 8 insertions(+), 8 deletions(-) [+] |
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--- a/featurecounts.xml Tue Jul 13 12:14:05 2021 +0000 +++ b/featurecounts.xml Mon Aug 30 13:47:52 2021 +0000 @@ -281,8 +281,8 @@ <conditional name = "multifeatures"> <param name="multifeat" type="select" label="Allow reads to map to multiple features" help="Setting -O, -M and --fraction"> - <option value="" selected="true">Disabled; reads that align to multiple features or overlapping features are excluded</option> - <option value="-M">Enabled; multi-mapping reads are included (-M)</option> + <option value="" selected="true">Disabled: reads that align to multiple features or overlapping features are excluded</option> + <option value="-M">Enabled: multi-mapping reads are included (-M)</option> <option value="-O">Enabled: multi-overlapping features are included (-O)</option> <option value="-O -M">Enabled: both multi-mapping and multi-overlapping features are included (-M -O)</option> </param> @@ -293,8 +293,8 @@ truevalue="--fraction" falsevalue="" argument="--fraction" - label="Assign fractions to multimapping reads" - help="If specified, a fractional count 1/n will be generated for each multi-mapping read, where n is the number of alignments (indica- ted by 'NH' tag) reported for the read."/> + label="Assign fractions to multi-mapping reads" + help="If specified, a fractional count 1/x will be generated for each multi-mapping read, where x is the number of alignments (indicated by 'NH' tag) reported for the read."/> </when> <when value="-O"> <param name="fraction" @@ -302,8 +302,8 @@ truevalue="--fraction" falsevalue="" argument="--fraction" - label="Assign fractions to multimapping reads" - help="If specified, a fractional count 1/n will be generated for each multi-overlapping read, where n is the number of alignments (indica- ted by 'NH' tag) reported for the read."/> + label="Assign fractions to multi-overlapping features" + help="If specified, a fractional count 1/y will be generated for each multi-overlapping feature, where y is the number of features overlapping with the read."/> </when> <when value="-O -M"> <param name="fraction" @@ -311,8 +311,8 @@ truevalue="--fraction" falsevalue="" argument="--fraction" - label="Assign fractions to multimapping reads" - help="If specified, a fractional count 1/n will be generated for each multi-mapping or multi-overlapping read, where n is the number of alignments (indica- ted by 'NH' tag) reported for the read."/> + label="Assign fractions to both multi-mapping reads and multi-overlapping features" + help="If specified, a fractional count 1/(x*y) will be generated, where x is the number of alignments (indicated by 'NH' tag) and y the number of overlapping features."/> </when> </conditional>