Mercurial > repos > iuc > featurecounts

changeset 12:b714f4620411 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/featurecounts commit 5c013729eeb48f723f7d436c4ded998c8d9291eb
author iuc
date Mon, 07 May 2018 06:21:58 -0400
parents e803ca6407c0
children 386220cf6877
files featurecounts.xml
diffstat 1 files changed, 2 insertions(+), 7 deletions(-) [+]
line wrap: on
line diff
--- a/featurecounts.xml	Fri Mar 16 14:05:55 2018 -0400
+++ b/featurecounts.xml	Mon May 07 06:21:58 2018 -0400
@@ -1,4 +1,4 @@
-<tool id="featurecounts" name="featureCounts" version="1.6.0.3" profile="16.04">
+<tool id="featurecounts" name="featureCounts" version="1.6.0.4" profile="16.04">
     <description>Measure gene expression in RNA-Seq experiments from SAM or BAM files.</description>
     <requirements>
         <requirement type="package" version="1.6.0">subread</requirement>
@@ -132,8 +132,7 @@
                multiple="false"
                format="bam,sam"
                label="Alignment file"
-               help="The input alignment file(s) where the gene expression has to be counted. The file can have a SAM or BAM format; but ALL files must be in the same format. These files must have the database/genome attribute already specified e.g. hg38, not the default: ?" >
-               <validator type="unspecified_build"/>
+               help="The input alignment file(s) where the gene expression has to be counted. The file can have a SAM or BAM format; but ALL files must be in the same format. Unless you are using a Gene annotation file from the History, these files must have the database/genome attribute already specified e.g. hg38, not the default: ?" >
         </param>
 
         <conditional name="anno">
@@ -163,10 +162,6 @@
                        type="data"
                        label="Gene annotation file"
                        help="The program assumes that the provided annotation file is in GTF format. Make sure that the gene annotation file corresponds to the same reference genome as used for the alignment">
-                    <options>
-                        <filter type="data_meta" key="dbkey" ref="alignment"/>
-                    </options>
-                    <validator type="no_options" message="The current history does not include a dataset with the build associated with the selected input file"/>
                 </param>
             </when>
         </conditional>