Mercurial > repos > iuc > fermi2
diff test-data/sv.vcf @ 0:b59546214e63 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fermikit commit 16dcfc0fb84fad80fcf18417ae46c5499c96147a
| author | iuc |
|---|---|
| date | Thu, 05 Jan 2017 08:35:31 -0500 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/sv.vcf Thu Jan 05 08:35:31 2017 -0500 @@ -0,0 +1,16 @@ +##fileformat=VCFv4.1 +##source=htsbox-abreak-r327 +##reference=/tmp/tmpIcvwsb/files/000/dataset_2.dat +##contig=<ID=11_1910000_1940000,length=30001> +##ALT=<ID=DEL,Description="Deletion"> +##ALT=<ID=INS,Description="Insertion"> +##INFO=<ID=SVLEN,Number=1,Type=Integer,Description="SV length"> +##INFO=<ID=SVTYPE,Number=1,Type=String,Description="Type of structural variant"> +##INFO=<ID=END,Number=1,Type=Integer,Description="End coordinate of this variant"> +##INFO=<ID=QGAP,Number=1,Type=Integer,Description="Length of gap on the query sequence"> +##INFO=<ID=MINMAPQ,Number=1,Type=Integer,Description="Min flanking mapping quality"> +##INFO=<ID=MINSC,Number=1,Type=Integer,Description="Min flanking alignment score"> +##INFO=<ID=MINTIPQ,Number=1,Type=Integer,Description="Min quality/depth flanking the break point"> +##FILTER=<ID=LowSupp,Description="MINTIPQ < 10"> +#CHROM POS ID REF ALT QUAL FILTER INFO +11_1910000_1940000 5276 . C <DEL> 30 . SVTYPE=DEL;END=26956;SVLEN=21678;QGAP=3;MINMAPQ=60;MINSC=793;MINTIPQ=23