Mercurial > repos > iuc > filter_tabular

annotate macros.xml @ 2:4a9b1cb3639b draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 4a3c9f195ba5d899b1a1ce5e80281cdf230f456a
author iuc
date Mon, 23 Oct 2017 13:27:29 -0400
parents cd2a99849f8b
children fe7be5634ab3
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
1 <macros>
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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diff changeset
2 <token name="@LINEFILTERS@">
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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diff changeset
3 <![CDATA[
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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diff changeset
4 ## set linefilters to the
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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5 #set $input_filters = []
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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6 #for $fi in $linefilters:
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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diff changeset
7 #if $fi.filter.filter_type == 'skip':
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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diff changeset
8 #set $skip_lines = None
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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diff changeset
9 #if str($fi.filter.skip_lines) != '':
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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diff changeset
10 #set $skip_lines = int($fi.filter.skip_lines)
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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11 #elif $tbl.table.metadata.comment_lines and $tbl.table.metadata.comment_lines > 0:
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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diff changeset
12 #set $skip_lines = int($tbl.table.metadata.comment_lines)
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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13 #end if
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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14 #if $skip_lines is not None:
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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15 #set $filter_dict = dict()
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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16 #set $filter_dict['filter'] = str($fi.filter.filter_type)
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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17 #set $filter_dict['count'] = $skip_lines
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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18 #silent $input_filters.append($filter_dict)
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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19 #end if
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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20 #elif $fi.filter.filter_type == 'comment':
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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21 #set $filter_dict = dict()
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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22 #set $filter_dict['filter'] = 'regex'
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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23 #set $filter_dict['pattern'] = '^(%s).*$' % '|'.join([chr(int(x)).replace('|','[|]') for x in (str($fi.filter.comment_char)).split(',')])
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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24 #set $filter_dict['action'] = 'exclude_match'
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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25 #silent $input_filters.append($filter_dict)
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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26 #elif $fi.filter.filter_type == 'regex':
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
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27 #set $filter_dict = dict()
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
28 #set $filter_dict['filter'] = str($fi.filter.filter_type)
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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29 #set $filter_dict['pattern'] = str($fi.filter.regex_pattern)
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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30 #set $filter_dict['action'] = str($fi.filter.regex_action)
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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31 #silent $input_filters.append($filter_dict)
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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32 #elif $fi.filter.filter_type == 'select_columns':
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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33 #set $filter_dict = dict()
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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34 #set $filter_dict['filter'] = str($fi.filter.filter_type)
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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diff changeset
35 #set $filter_dict['columns'] = [int(str($ci).replace('c','')) for $ci in str($fi.filter.columns).split(',')]
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
36 #silent $input_filters.append($filter_dict)
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
37 #elif $fi.filter.filter_type == 'replace':
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
38 #set $filter_dict = dict()
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
39 #set $filter_dict['filter'] = str($fi.filter.filter_type)
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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40 #set $filter_dict['column'] = int(str($fi.filter.column).replace('c',''))
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
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41 #set $filter_dict['pattern'] = str($fi.filter.regex_pattern)
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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42 #set $filter_dict['replace'] = str($fi.filter.regex_replace)
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
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43 #silent $input_filters.append($filter_dict)
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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44 #elif str($fi.filter.filter_type).endswith('pend_line_num'):
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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45 #set $filter_dict = dict()
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
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46 #set $filter_dict['filter'] = str($fi.filter.filter_type)
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
47 #silent $input_filters.append($filter_dict)
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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48 #elif str($fi.filter.filter_type).endswith('pend_text'):
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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49 #set $filter_dict = dict()
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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50 #set $filter_dict['filter'] = str($fi.filter.filter_type)
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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51 #set $filter_dict['column_text'] = str($fi.filter.column_text)
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
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52 #silent $input_filters.append($filter_dict)
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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53 #elif $fi.filter.filter_type == 'normalize':
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
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54 #set $filter_dict = dict()
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
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55 #set $filter_dict['filter'] = str($fi.filter.filter_type)
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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56 #set $filter_dict['columns'] = [int(str($ci).replace('c','')) for $ci in str($fi.filter.columns).split(',')]
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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57 #set $filter_dict['separator'] = str($fi.filter.separator)
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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58 #silent $input_filters.append($filter_dict)
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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59 #end if
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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60 #end for
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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61 ]]>
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
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62 </token>
1
cd2a99849f8b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845
iuc
parents: 0
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63 <token name="@RESULT_HEADER@">
cd2a99849f8b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845
iuc
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64 <![CDATA[
cd2a99849f8b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845
iuc
parents: 0
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65 #if $query_result.header == 'yes':
cd2a99849f8b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845
iuc
parents: 0
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66 #if $query_result.header_prefix:
cd2a99849f8b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845
iuc
parents: 0
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67 #set $header_prefix = chr(int(str($query_result.header_prefix)))
cd2a99849f8b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845
iuc
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68 --comment_char='$header_prefix'
cd2a99849f8b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845
iuc
parents: 0
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69 #end if
cd2a99849f8b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845
iuc
parents: 0
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70 #else
cd2a99849f8b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845
iuc
parents: 0
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71 --no_header
cd2a99849f8b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845
iuc
parents: 0
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72 #end if
cd2a99849f8b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845
iuc
parents: 0
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73 ]]>
cd2a99849f8b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845
iuc
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74 </token>
cd2a99849f8b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845
iuc
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75 <xml name="comment_char_options">
cd2a99849f8b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845
iuc
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76 <option value="62">&gt;</option>
cd2a99849f8b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845
iuc
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77 <option value="64">@</option>
cd2a99849f8b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845
iuc
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78 <option value="43">+</option>
cd2a99849f8b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845
iuc
parents: 0
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79 <option value="60">&lt;</option>
cd2a99849f8b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845
iuc
parents: 0
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80 <option value="42">*</option>
cd2a99849f8b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845
iuc
parents: 0
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81 <option value="45">-</option>
cd2a99849f8b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845
iuc
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82 <option value="61">=</option>
cd2a99849f8b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845
iuc
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83 <option value="124">|</option>
cd2a99849f8b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845
iuc
parents: 0
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84 <option value="63">?</option>
cd2a99849f8b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845
iuc
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85 <option value="36">$</option>
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86 <option value="46">.</option>
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87 <option value="58">:</option>
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88 <option value="38">&amp;</option>
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89 <option value="37">%</option>
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90 <option value="94">^</option>
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91 <option value="35" selected="true">&#35;</option>
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92 <option value="33">!</option>
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93 </xml>
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94 <xml name="result_results_header_line">
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95 <conditional name="query_result">
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96 <param name="header" type="select" label="include query result column headers">
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97 <option value="yes">Yes</option>
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98 <option value="no">No</option>
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99 </param>
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100 <when value="yes">
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101 <param name="header_prefix" type="select" optional="true" label="Prefix character for column_header line">
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102 <option value="">no comment character prefix</option>
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103 <expand macro="comment_char_options" />
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104 </param>
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105 </when>
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106 <when value="no"/>
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107 </conditional>
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108 </xml>
0
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109 <xml name="macro_line_filters">
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110 <repeat name="linefilters" title="Filter Tabular Input Lines">
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111 <conditional name="filter">
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112 <param name="filter_type" type="select" label="Filter By">
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113 <option value="skip">skip leading lines</option>
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114 <option value="comment">comment char</option>
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115 <option value="regex">by regex expression matching</option>
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116 <option value="select_columns">select columns</option>
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117 <option value="replace">regex replace value in column</option>
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118 <option value="prepend_line_num">prepend a line number column</option>
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119 <option value="append_line_num">append a line number column</option>
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120 <option value="prepend_text">prepend a column with the given text</option>
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121 <option value="append_text">append a column with the given text</option>
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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122 <option value="normalize">normalize list columns, replicates row for each item in list</option>
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123 </param>
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124 <when value="skip">
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125 <param name="skip_lines" type="integer" value="" min="0" optional="true" label="Skip lines"
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126 help="Leave blank to use the comment lines metadata for this dataset" />
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127 </when>
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128 <when value="comment">
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129 <param name="comment_char" type="select" display="checkboxes" multiple="True" label="Ignore lines beginning with these characters" help="lines beginning with these are skipped">
1
cd2a99849f8b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845
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130 <expand macro="comment_char_options" />
0
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131 </param>
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132 </when>
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133 <when value="prepend_line_num"/>
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134 <when value="append_line_num"/>
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135 <when value="prepend_text">
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136 <param name="column_text" type="text" value="" label="text for column">
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137 </param>
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138 </when>
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139 <when value="append_text">
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140 <param name="column_text" type="text" value="" label="text for column">
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141 </param>
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142 </when>
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143 <when value="regex">
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144 <param name="regex_pattern" type="text" value="" label="regex pattern">
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145 <sanitizer sanitize="False"/>
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146 </param>
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147 <param name="regex_action" type="select" label="action for regex match">
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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148 <option value="exclude_match">exclude line on pattern match</option>
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149 <option value="include_match">include line on pattern match</option>
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150 <option value="exclude_find">exclude line if pattern found</option>
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151 <option value="include_find">include line if pattern found</option>
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152 </param>
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153 </when>
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154 <when value="select_columns">
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155 <param name="columns" type="text" value="" label="enter column numbers to keep"
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156 help="example: 1,4,2 or c1,c4,c2(selects the first,fourth, and second columns)">
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157 <validator type="regex" message="Column ordinal positions separated by commas">^(c?[1-9]\d*)(,c?[1-9]\d*)*$</validator>
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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158 </param>
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159 </when>
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160 <when value="replace">
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161 <param name="column" type="text" value="" label="enter column number to replace"
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162 help="example: 1 or c1 (selects the first column)">
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163 <validator type="regex" message="Column ordinal position separated by commas">^(c?[1-9]\d*)$</validator>
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164 </param>
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165 <param name="regex_pattern" type="text" value="" label="regex pattern">
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166 <sanitizer sanitize="False"/>
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167 </param>
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168 <param name="regex_replace" type="text" value="" label="replacement expression">
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169 <sanitizer sanitize="False"/>
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170 </param>
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171 </when>
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172 <when value="normalize">
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173 <param name="columns" type="text" value="" label="enter column numbers to normalize">
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174 <help><![CDATA[
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175 example: 2,4 or c2,c4 (selects the second, and fourth columns)
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176 If multiple columns are selected, they should have the same length and separator on each line
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177 ]]></help>
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178 <validator type="regex" message="Column ordinal positions separated by commas">^(c?[1-9]\d*)(,c?[1-9]\d*)*$</validator>
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179 </param>
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180 <param name="separator" type="text" value="," label="List item delimiter in column">
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181 <sanitizer sanitize="False"/>
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182 <validator type="regex" message="Anything but TAB or Newline">^[^\t\n\r\f\v]+$</validator>
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183 </param>
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184 </when>
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185 </conditional>
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186 </repeat>
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187 </xml>
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188
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189 <token name="@LINEFILTERS_HELP@">
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190 <![CDATA[
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191 **Input Line Filters**
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192
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193 As a tabular file is being read, line filters may be applied.
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194
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195 ::
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196
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197 - skip leading lines skip the first *number* of lines
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198 - comment char omit any lines that start with the specified comment character
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199 - by regex expression matching *include/exclude* lines the match the regex expression
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200 - select columns choose to include only selected columns in the order specified
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201 - regex replace value in column replace a field in a column using a regex substitution (good for date reformatting)
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202 - prepend a line number column each line has the ordinal value of the line read by this filter as the first column
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203 - append a line number column each line has the ordinal value of the line read by this filter as the last column
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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204 - prepend a text column each line has the text string as the first column
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205 - append a text column each line has the text string as the last column
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206 - normalize list columns replicates the line for each item in the specified list *columns*
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207 ]]>
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208 </token>
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209
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210 <token name="@LINEFILTERS_HELP_EXAMPLE@">
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211 <![CDATA[
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212 **Line Filtering Example**
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213 *(Six filters are applied as the following file is read)*
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214
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215 ::
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216
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217 Input Tabular File:
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218
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219 #People with pets
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220 Pets FirstName LastName DOB PetNames PetType
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221 2 Paula Brown 24/05/78 Rex,Fluff dog,cat
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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222 1 Steven Jones 04/04/74 Allie cat
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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223 0 Jane Doe 24/05/78
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224 1 James Smith 20/10/80 Spot
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225
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226
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227 Filter 1 - append a line number column:
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228
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229 #People with pets 1
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230 Pets FirstName LastName DOB PetNames PetType 2
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231 2 Paula Brown 24/05/78 Rex,Fluff dog,cat 3
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232 1 Steven Jones 04/04/74 Allie cat 4
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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233 0 Jane Doe 24/05/78 5
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234 1 James Smith 20/10/80 Spot 6
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235
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236 Filter 2 - by regex expression matching [include]: '^\d+' (include lines that start with a number)
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237
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238 2 Paula Brown 24/05/78 Rex,Fluff dog,cat 3
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239 1 Steven Jones 04/04/74 Allie cat 4
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240 0 Jane Doe 24/05/78 5
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241 1 James Smith 20/10/80 Spot 6
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242
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243 Filter 3 - append a line number column:
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244
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245 2 Paula Brown 24/05/78 Rex,Fluff dog,cat 3 1
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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246 1 Steven Jones 04/04/74 Allie cat 4 2
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247 0 Jane Doe 24/05/78 5 3
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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248 1 James Smith 20/10/80 Spot 6 4
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249
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250 Filter 4 - regex replace value in column[4]: '(\d+)/(\d+)/(\d+)' '19\3-\2-\1' (convert dates to sqlite format)
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251
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252 2 Paula Brown 1978-05-24 Rex,Fluff dog,cat 3 1
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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253 1 Steven Jones 1974-04-04 Allie cat 4 2
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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254 0 Jane Doe 1978-05-24 5 3
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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255 1 James Smith 1980-10-20 Spot 6 4
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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256
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257 Filter 5 - normalize list columns[5,6]:
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258
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259 2 Paula Brown 1978-05-24 Rex dog 3 1
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260 2 Paula Brown 1978-05-24 Fluff cat 3 1
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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261 1 Steven Jones 1974-04-04 Allie cat 4 2
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262 0 Jane Doe 1978-05-24 5 3
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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263 1 James Smith 1980-10-20 Spot 6 4
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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264
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265 Filter 6 - append a line number column:
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266
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267 2 Paula Brown 1978-05-24 Rex dog 3 1 1
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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268 2 Paula Brown 1978-05-24 Fluff cat 3 1 2
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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269 1 Steven Jones 1974-04-04 Allie cat 4 2 3
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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270 0 Jane Doe 1978-05-24 5 3 4
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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271 1 James Smith 1980-10-20 Spot 6 4 5
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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272
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273 ]]>
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274 </token>
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275
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276 <token name="@QUERY_HELP@">
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277 <![CDATA[
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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278
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279 For help in using SQLite_ see: http://www.sqlite.org/docs.html
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280
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281 **NOTE:** input for SQLite dates input field must be in the format: *YYYY-MM-DD* for example: 2015-09-30
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282
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283 See: http://www.sqlite.org/lang_datefunc.html
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284
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285 **Example**
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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286
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287 Given 2 tabular datasets: *customers* and *sales*
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288
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289 Dataset *customers*
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290
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291 Table name: "customers"
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292
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293 Column names: "CustomerID,FirstName,LastName,Email,DOB,Phone"
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294
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295 =========== ========== ========== ===================== ========== ============
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296 #CustomerID FirstName LastName Email DOB Phone
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297 =========== ========== ========== ===================== ========== ============
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298 1 John Smith John.Smith@yahoo.com 1968-02-04 626 222-2222
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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299 2 Steven Goldfish goldfish@fishhere.net 1974-04-04 323 455-4545
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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300 3 Paula Brown pb@herowndomain.org 1978-05-24 416 323-3232
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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301 4 James Smith jim@supergig.co.uk 1980-10-20 416 323-8888
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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302 =========== ========== ========== ===================== ========== ============
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303
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304 Dataset *sales*
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305
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306 Table name: "sales"
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307
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308 Column names: "CustomerID,Date,SaleAmount"
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309
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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310 ============= ============ ============
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311 #CustomerID Date SaleAmount
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312 ============= ============ ============
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313 2 2004-05-06 100.22
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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314 1 2004-05-07 99.95
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315 3 2004-05-07 122.95
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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316 3 2004-05-13 100.00
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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317 4 2004-05-22 555.55
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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318 ============= ============ ============
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319
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320 The query
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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321
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322 ::
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323
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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324 SELECT FirstName,LastName,sum(SaleAmount) as "TotalSales"
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325 FROM customers join sales on customers.CustomerID = sales.CustomerID
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326 GROUP BY customers.CustomerID ORDER BY TotalSales DESC;
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327
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328 Produces this tabular output:
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329
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330 ========== ======== ==========
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331 #FirstName LastName TotalSales
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332 ========== ======== ==========
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333 James Smith 555.55
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334 Paula Brown 222.95
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335 Steven Goldfish 100.22
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336 John Smith 99.95
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337 ========== ======== ==========
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338
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339
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340 If the optional Table name and Column names inputs are not used, the query would be:
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341
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342 ::
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343
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344 SELECT t1.c2 as "FirstName", t1.c3 as "LastName", sum(t2.c3) as "TotalSales"
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345 FROM t1 join t2 on t1.c1 = t2.c1
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346 GROUP BY t1.c1 ORDER BY TotalSales DESC;
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347
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348 You can selectively name columns, e.g. on the customers input you could just name columns 2,3, and 5:
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349
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350 Column names: ,FirstName,LastName,,BirthDate
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351
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352 Results in the following data base table
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353
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354 =========== ========== ========== ===================== ========== ============
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355 #c1 FirstName LastName c4 BirthDate c6
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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356 =========== ========== ========== ===================== ========== ============
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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357 1 John Smith John.Smith@yahoo.com 1968-02-04 626 222-2222
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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358 2 Steven Goldfish goldfish@fishhere.net 1974-04-04 323 455-4545
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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359 3 Paula Brown pb@herowndomain.org 1978-05-24 416 323-3232
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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360 4 James Smith jim@supergig.co.uk 1980-10-20 416 323-8888
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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361 =========== ========== ========== ===================== ========== ============
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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362
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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363
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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364 Regular_expression_ functions are included for:
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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365
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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366 ::
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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367
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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368 matching: re_match('pattern',column)
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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369
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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370 SELECT t1.FirstName, t1.LastName
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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371 FROM t1
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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372 WHERE re_match('^.*\.(net|org)$',c4)
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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373
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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374 Results:
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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375
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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376 =========== ==========
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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377 #FirstName LastName
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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378 =========== ==========
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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379 Steven Goldfish
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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380 Paula Brown
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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381 =========== ==========
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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382
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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383
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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384 ::
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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385
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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386 searching: re_search('pattern',column)
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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387 substituting: re_sub('pattern','replacement,column)
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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388
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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389 SELECT t1.FirstName, t1.LastName, re_sub('^\d{2}(\d{2})-(\d\d)-(\d\d)','\3/\2/\1',BirthDate) as "DOB"
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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390 FROM t1
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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391 WHERE re_search('[hp]er',c4)
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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392
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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393 Results:
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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394
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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395
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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396 =========== ========== ==========
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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397 #FirstName LastName DOB
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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398 =========== ========== ==========
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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399 Steven Goldfish 04/04/74
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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400 Paula Brown 24/05/78
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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401 James Smith 20/10/80
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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402 =========== ========== ==========
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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403
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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404 .. _Regular_expression: https://docs.python.org/release/2.7/library/re.html
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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405 .. _SQLite: http://www.sqlite.org/index.html
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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406 .. _SQLite_functions: http://www.sqlite.org/docs.html
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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407
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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408
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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409 ]]>
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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410 </token>
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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411
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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412 </macros>
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
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413