Mercurial > repos > iuc > filter_tabular

annotate filter_tabular.xml @ 15:90f657745fea draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit dd35055c76d86fe98985b5825c1751efb8208242
author iuc
date Thu, 27 Jun 2024 17:23:47 +0000
parents 4d5aae46f850
children
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rev   line source
15
90f657745fea planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit dd35055c76d86fe98985b5825c1751efb8208242
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1 <tool id="filter_tabular" name="Filter Tabular" version="3.3.1">
0
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2 <description></description>
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3
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4 <macros>
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5 <import>macros.xml</import>
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6 </macros>
8
59278960a2e7 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 1647065a8e6e8d8c98cd0d2194b695fb9425f541"
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7 <expand macro="requirements"/>
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8 <command detect_errors="exit_code"><![CDATA[
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9 python '$__tool_directory__/filter_tabular.py'
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10 -i '$input'
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11 $comment_char
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12 -j '$filter_json'
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13 -o '$output'
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14 ]]></command>
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15 <configfiles>
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16 <configfile name="filter_json">
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17 #import json
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18 #set $dataset_name = $input.element_identifier
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19 #set $table=$input
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20 @LINEFILTERS@
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21 #echo $json.dumps($input_filters)
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22 </configfile>
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23 </configfiles>
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24 <inputs>
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25 <param name="input" type="data" format="tabular" label="Tabular Dataset to filter"/>
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26 <param name="comment_char" type="boolean" truevalue="--comment_char '#'" falsevalue="" checked="true" label="exclude lines starting with #"/>
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27 <expand macro="macro_line_filters" />
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28 </inputs>
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29 <outputs>
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30 <data format="tabular" name="output" />
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31 </outputs>
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32 <tests>
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33 <test>
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34 <param name="input" ftype="tabular" value="pets.tsv"/>
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35 <repeat name="linefilters">
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36 <conditional name="filter">
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37 <param name="filter_type" value="regex"/>
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38 <param name="regex_pattern" value="^\d+"/>
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39 <param name="regex_action" value="include_find"/>
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40 </conditional>
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41 </repeat>
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42 <repeat name="linefilters">
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43 <conditional name="filter">
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44 <param name="filter_type" value="append_line_num"/>
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45 </conditional>
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46 </repeat>
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47 <repeat name="linefilters">
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48 <conditional name="filter">
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49 <param name="filter_type" value="select_columns"/>
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50 <param name="columns" value="7,2,3,4,1"/>
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51 </conditional>
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52 </repeat>
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53 <repeat name="linefilters">
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54 <conditional name="filter">
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55 <param name="filter_type" value="replace"/>
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56 <param name="column" value="c4"/>
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57 <param name="regex_pattern" value="(\d+)/(\d+)/(\d+)"/>
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58 <param name="regex_replace" value="19\3-\2-\1"/>
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59 </conditional>
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60 </repeat>
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61 <output name="output" file="filtered_people_results.tsv"/>
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62 </test>
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63 <test>
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64 <param name="input" ftype="tabular" value="pets.tsv"/>
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65 <repeat name="linefilters">
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66 <conditional name="filter">
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67 <param name="filter_type" value="comment"/>
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68 <param name="comment_char" value="35"/>
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69 </conditional>
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70 </repeat>
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71 <repeat name="linefilters">
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72 <conditional name="filter">
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73 <param name="filter_type" value="regex"/>
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74 <param name="regex_pattern" value="^\d+"/>
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75 <param name="regex_action" value="include_find"/>
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76 </conditional>
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77 </repeat>
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78 <repeat name="linefilters">
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79 <conditional name="filter">
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80 <param name="filter_type" value="append_line_num"/>
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81 </conditional>
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82 </repeat>
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83 <repeat name="linefilters">
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84 <conditional name="filter">
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85 <param name="filter_type" value="select_columns"/>
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86 <param name="columns" value="c7,c5,c6"/>
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87 </conditional>
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88 </repeat>
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89 <repeat name="linefilters">
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
90 <conditional name="filter">
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
91 <param name="filter_type" value="normalize"/>
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
92 <param name="columns" value="c2,c3"/>
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
93 <param name="separator" value=","/>
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
94 </conditional>
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
95 </repeat>
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
96 <repeat name="linefilters">
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
97 <conditional name="filter">
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
98 <param name="filter_type" value="regex"/>
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
99 <param name="regex_pattern" value="^\d+\t\t"/>
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
100 <param name="regex_action" value="exclude_match"/>
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
101 </conditional>
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
102 </repeat>
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
103 <output name="output" file="filtered_pets_results.tsv"/>
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
104 </test>
6fbd9d25ceef planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d
iuc
parents:
diff changeset
105
9
69b08fc9557c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit daa9af57fe07ee83a45ddc9f855716f9d14a8e12"
iuc
parents: 8
diff changeset
106 <test>
69b08fc9557c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit daa9af57fe07ee83a45ddc9f855716f9d14a8e12"
iuc
parents: 8
diff changeset
107 <param name="input" ftype="tabular" value="customers.tsv"/>
69b08fc9557c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit daa9af57fe07ee83a45ddc9f855716f9d14a8e12"
iuc
parents: 8
diff changeset
108 <repeat name="linefilters">
69b08fc9557c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit daa9af57fe07ee83a45ddc9f855716f9d14a8e12"
iuc
parents: 8
diff changeset
109 <conditional name="filter">
69b08fc9557c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit daa9af57fe07ee83a45ddc9f855716f9d14a8e12"
iuc
parents: 8
diff changeset
110 <param name="filter_type" value="regex"/>
69b08fc9557c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit daa9af57fe07ee83a45ddc9f855716f9d14a8e12"
iuc
parents: 8
diff changeset
111 <param name="regex_pattern" value="^\d+"/>
69b08fc9557c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit daa9af57fe07ee83a45ddc9f855716f9d14a8e12"
iuc
parents: 8
diff changeset
112 <param name="regex_action" value="include_find"/>
69b08fc9557c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit daa9af57fe07ee83a45ddc9f855716f9d14a8e12"
iuc
parents: 8
diff changeset
113 </conditional>
69b08fc9557c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit daa9af57fe07ee83a45ddc9f855716f9d14a8e12"
iuc
parents: 8
diff changeset
114 </repeat>
69b08fc9557c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit daa9af57fe07ee83a45ddc9f855716f9d14a8e12"
iuc
parents: 8
diff changeset
115 <repeat name="linefilters">
69b08fc9557c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit daa9af57fe07ee83a45ddc9f855716f9d14a8e12"
iuc
parents: 8
diff changeset
116 <conditional name="filter">
69b08fc9557c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit daa9af57fe07ee83a45ddc9f855716f9d14a8e12"
iuc
parents: 8
diff changeset
117 <param name="filter_type" value="replace"/>
69b08fc9557c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit daa9af57fe07ee83a45ddc9f855716f9d14a8e12"
iuc
parents: 8
diff changeset
118 <param name="column" value="c4"/>
69b08fc9557c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit daa9af57fe07ee83a45ddc9f855716f9d14a8e12"
iuc
parents: 8
diff changeset
119 <param name="regex_pattern" value=".*@(.*)"/>
69b08fc9557c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit daa9af57fe07ee83a45ddc9f855716f9d14a8e12"
iuc
parents: 8
diff changeset
120 <param name="regex_replace" value="\1"/>
69b08fc9557c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit daa9af57fe07ee83a45ddc9f855716f9d14a8e12"
iuc
parents: 8
diff changeset
121 <param name="add" value="after"/>
69b08fc9557c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit daa9af57fe07ee83a45ddc9f855716f9d14a8e12"
iuc
parents: 8
diff changeset
122 </conditional>
69b08fc9557c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit daa9af57fe07ee83a45ddc9f855716f9d14a8e12"
iuc
parents: 8
diff changeset
123 </repeat>
69b08fc9557c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit daa9af57fe07ee83a45ddc9f855716f9d14a8e12"
iuc
parents: 8
diff changeset
124 <repeat name="linefilters">
69b08fc9557c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit daa9af57fe07ee83a45ddc9f855716f9d14a8e12"
iuc
parents: 8
diff changeset
125 <conditional name="filter">
69b08fc9557c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit daa9af57fe07ee83a45ddc9f855716f9d14a8e12"
iuc
parents: 8
diff changeset
126 <param name="filter_type" value="replace"/>
69b08fc9557c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit daa9af57fe07ee83a45ddc9f855716f9d14a8e12"
iuc
parents: 8
diff changeset
127 <param name="column" value="c4"/>
69b08fc9557c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit daa9af57fe07ee83a45ddc9f855716f9d14a8e12"
iuc
parents: 8
diff changeset
128 <param name="regex_pattern" value=".*(com|org|net)$"/>
69b08fc9557c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit daa9af57fe07ee83a45ddc9f855716f9d14a8e12"
iuc
parents: 8
diff changeset
129 <param name="regex_replace" value="\1"/>
69b08fc9557c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit daa9af57fe07ee83a45ddc9f855716f9d14a8e12"
iuc
parents: 8
diff changeset
130 <param name="add" value="append"/>
69b08fc9557c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit daa9af57fe07ee83a45ddc9f855716f9d14a8e12"
iuc
parents: 8
diff changeset
131 </conditional>
69b08fc9557c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit daa9af57fe07ee83a45ddc9f855716f9d14a8e12"
iuc
parents: 8
diff changeset
132 </repeat>
11
6544e4b87a4f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit d624cde6382bc326a5ae318482e16e643ef7d7d1"
iuc
parents: 9
diff changeset
133 <repeat name="linefilters">
6544e4b87a4f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit d624cde6382bc326a5ae318482e16e643ef7d7d1"
iuc
parents: 9
diff changeset
134 <conditional name="filter">
6544e4b87a4f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit d624cde6382bc326a5ae318482e16e643ef7d7d1"
iuc
parents: 9
diff changeset
135 <param name="filter_type" value="replace"/>
6544e4b87a4f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit d624cde6382bc326a5ae318482e16e643ef7d7d1"
iuc
parents: 9
diff changeset
136 <param name="column" value="c6"/>
6544e4b87a4f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit d624cde6382bc326a5ae318482e16e643ef7d7d1"
iuc
parents: 9
diff changeset
137 <param name="regex_pattern" value="^(\d+)-(\d+)-(\d+)$"/>
6544e4b87a4f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit d624cde6382bc326a5ae318482e16e643ef7d7d1"
iuc
parents: 9
diff changeset
138 <param name="regex_replace" value="\1"/>
6544e4b87a4f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit d624cde6382bc326a5ae318482e16e643ef7d7d1"
iuc
parents: 9
diff changeset
139 <param name="add" value="prepend"/>
6544e4b87a4f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit d624cde6382bc326a5ae318482e16e643ef7d7d1"
iuc
parents: 9
diff changeset
140 </conditional>
6544e4b87a4f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit d624cde6382bc326a5ae318482e16e643ef7d7d1"
iuc
parents: 9
diff changeset
141 </repeat>
9
69b08fc9557c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit daa9af57fe07ee83a45ddc9f855716f9d14a8e12"
iuc
parents: 8
diff changeset
142 <output name="output" file="filtered_customers_results.tsv"/>
69b08fc9557c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit daa9af57fe07ee83a45ddc9f855716f9d14a8e12"
iuc
parents: 8
diff changeset
143 </test>
13
4d5aae46f850 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 35576d64a12fa664d72559172c5960c09da2b632"
iuc
parents: 11
diff changeset
144 <test>
4d5aae46f850 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 35576d64a12fa664d72559172c5960c09da2b632"
iuc
parents: 11
diff changeset
145 <param name="input" ftype="tabular" value="IEDB.tsv"/>
4d5aae46f850 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 35576d64a12fa664d72559172c5960c09da2b632"
iuc
parents: 11
diff changeset
146 <param name="comment_char" value="False"/>
4d5aae46f850 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 35576d64a12fa664d72559172c5960c09da2b632"
iuc
parents: 11
diff changeset
147 <repeat name="linefilters">
4d5aae46f850 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 35576d64a12fa664d72559172c5960c09da2b632"
iuc
parents: 11
diff changeset
148 <conditional name="filter">
4d5aae46f850 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 35576d64a12fa664d72559172c5960c09da2b632"
iuc
parents: 11
diff changeset
149 <param name="filter_type" value="replace"/>
4d5aae46f850 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 35576d64a12fa664d72559172c5960c09da2b632"
iuc
parents: 11
diff changeset
150 <param name="column" value="c1"/>
4d5aae46f850 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 35576d64a12fa664d72559172c5960c09da2b632"
iuc
parents: 11
diff changeset
151 <param name="regex_pattern" value="#ID"/>
4d5aae46f850 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 35576d64a12fa664d72559172c5960c09da2b632"
iuc
parents: 11
diff changeset
152 <param name="regex_replace" value="ID"/>
4d5aae46f850 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 35576d64a12fa664d72559172c5960c09da2b632"
iuc
parents: 11
diff changeset
153 </conditional>
4d5aae46f850 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 35576d64a12fa664d72559172c5960c09da2b632"
iuc
parents: 11
diff changeset
154 </repeat>
4d5aae46f850 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 35576d64a12fa664d72559172c5960c09da2b632"
iuc
parents: 11
diff changeset
155 <repeat name="linefilters">
4d5aae46f850 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 35576d64a12fa664d72559172c5960c09da2b632"
iuc
parents: 11
diff changeset
156 <conditional name="filter">
4d5aae46f850 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 35576d64a12fa664d72559172c5960c09da2b632"
iuc
parents: 11
diff changeset
157 <param name="filter_type" value="select_column_slices"/>
4d5aae46f850 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 35576d64a12fa664d72559172c5960c09da2b632"
iuc
parents: 11
diff changeset
158 <param name="columns" value="6,0:6,8,-3"/>
4d5aae46f850 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 35576d64a12fa664d72559172c5960c09da2b632"
iuc
parents: 11
diff changeset
159 </conditional>
4d5aae46f850 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 35576d64a12fa664d72559172c5960c09da2b632"
iuc
parents: 11
diff changeset
160 </repeat>
4d5aae46f850 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 35576d64a12fa664d72559172c5960c09da2b632"
iuc
parents: 11
diff changeset
161 <repeat name="linefilters">
4d5aae46f850 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 35576d64a12fa664d72559172c5960c09da2b632"
iuc
parents: 11
diff changeset
162 <conditional name="filter">
4d5aae46f850 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 35576d64a12fa664d72559172c5960c09da2b632"
iuc
parents: 11
diff changeset
163 <param name="filter_type" value="append_dataset_name"/>
4d5aae46f850 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 35576d64a12fa664d72559172c5960c09da2b632"
iuc
parents: 11
diff changeset
164 </conditional>
4d5aae46f850 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 35576d64a12fa664d72559172c5960c09da2b632"
iuc
parents: 11
diff changeset
165 </repeat>
4d5aae46f850 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 35576d64a12fa664d72559172c5960c09da2b632"
iuc
parents: 11
diff changeset
166 <output name="output" file="filtered_IEDB.tsv"/>
4d5aae46f850 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 35576d64a12fa664d72559172c5960c09da2b632"
iuc
parents: 11
diff changeset
167 </test>
15
90f657745fea planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit dd35055c76d86fe98985b5825c1751efb8208242
iuc
parents: 13
diff changeset
168 <test>
90f657745fea planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit dd35055c76d86fe98985b5825c1751efb8208242
iuc
parents: 13
diff changeset
169 <param name="input" ftype="tabular" value="math_input.tsv"/>
90f657745fea planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit dd35055c76d86fe98985b5825c1751efb8208242
iuc
parents: 13
diff changeset
170 <param name="comment_char" value="False"/>
90f657745fea planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit dd35055c76d86fe98985b5825c1751efb8208242
iuc
parents: 13
diff changeset
171 <repeat name="linefilters">
90f657745fea planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit dd35055c76d86fe98985b5825c1751efb8208242
iuc
parents: 13
diff changeset
172 <conditional name="filter">
90f657745fea planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit dd35055c76d86fe98985b5825c1751efb8208242
iuc
parents: 13
diff changeset
173 <param name="filter_type" value="skip"/>
90f657745fea planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit dd35055c76d86fe98985b5825c1751efb8208242
iuc
parents: 13
diff changeset
174 <param name="skiplines" value=""/>
90f657745fea planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit dd35055c76d86fe98985b5825c1751efb8208242
iuc
parents: 13
diff changeset
175 </conditional>
90f657745fea planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit dd35055c76d86fe98985b5825c1751efb8208242
iuc
parents: 13
diff changeset
176 </repeat>
90f657745fea planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit dd35055c76d86fe98985b5825c1751efb8208242
iuc
parents: 13
diff changeset
177 <output name="output" file="math_input.tsv"/>
90f657745fea planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit dd35055c76d86fe98985b5825c1751efb8208242
iuc
parents: 13
diff changeset
178 </test>
0
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179 </tests>
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180 <help><![CDATA[
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181 ==============
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182 Filter Tabular
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183 ==============
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184
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185 Filter a tabular dataset by applying line filters as it is being read.
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186 Multiple filters may be used with each filter using the result of the previous filter.
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187
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188 **Inputs**
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189
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190 A tabular dataset.
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191
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192
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193 **Outputs**
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194
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195 A filtered tabular dataset.
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196
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197
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198 @LINEFILTERS_HELP@
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199
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200 @LINEFILTERS_HELP_EXAMPLE@
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201
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202 ]]></help>
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203 <expand macro="citations" />
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204 </tool>