Mercurial > repos > iuc > filter_tabular
diff filters.py @ 15:90f657745fea draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit dd35055c76d86fe98985b5825c1751efb8208242
author | iuc |
---|---|
date | Thu, 27 Jun 2024 17:23:47 +0000 |
parents | 4d5aae46f850 |
children |
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--- a/filters.py Wed Sep 13 12:15:22 2023 +0000 +++ b/filters.py Thu Jun 27 17:23:47 2024 +0000 @@ -11,7 +11,7 @@ def __init__(self, source, filter_dict): self.source = source self.filter_dict = filter_dict - self.func = lambda i, l: l.rstrip('\r\n') if l else None + self.func = lambda i, line: line.rstrip('\r\n') if line else None self.src_lines = [] self.src_line_cnt = 0 @@ -28,23 +28,23 @@ if filter_dict['filter'] == 'regex': rgx = re.compile(filter_dict['pattern']) if filter_dict['action'] == 'exclude_match': - self.func = lambda i, l: l if not rgx.match(l) else None + self.func = lambda i, line: line if not rgx.match(line) else None elif filter_dict['action'] == 'include_match': - self.func = lambda i, l: l if rgx.match(l) else None + self.func = lambda i, line: line if rgx.match(line) else None elif filter_dict['action'] == 'exclude_find': - self.func = lambda i, l: l if not rgx.search(l) else None + self.func = lambda i, line: line if not rgx.search(line) else None elif filter_dict['action'] == 'include_find': - self.func = lambda i, l: l if rgx.search(l) else None + self.func = lambda i, line: line if rgx.search(line) else None elif filter_dict['filter'] == 'select_columns': cols = [int(c) - 1 for c in filter_dict['columns']] - self.func = lambda i, l: self.select_columns(l, cols) + self.func = lambda i, line: self.select_columns(line, cols) elif filter_dict['filter'] == 'select_column_slices': cols = [x if isinstance(x, int) else [y if y is not None else None for y in [xint(k) for k in x.split(':')]] for x in [xint(c) for c in filter_dict['columns']]] if all([isinstance(x, int) for x in cols]): - self.func = lambda i, l: self.select_columns(l, cols) + self.func = lambda i, line: self.select_columns(line, cols) else: cols = [slice(x[0], x[1], x[2] if len(x) > 2 else None) if isinstance(x, list) else x for x in cols] - self.func = lambda i, l: self.select_slices(l, cols) + self.func = lambda i, line: self.select_slices(line, cols) elif filter_dict['filter'] == 'replace': p = filter_dict['pattern'] r = filter_dict['replace'] @@ -54,32 +54,32 @@ 'append', 'before', 'after']: - self.func = lambda i, l: '\t'.join( + self.func = lambda i, line: '\t'.join( [x if j != c else re.sub(p, r, x) - for j, x in enumerate(l.split('\t'))]) + for j, x in enumerate(line.split('\t'))]) else: a = 0 if filter_dict['add'] == 'prepend'\ else min(0, c - 1) if filter_dict['add'] == 'before'\ else c + 1 if filter_dict['add'] == 'after'\ else None - self.func = lambda i, l: self.replace_add(l, p, r, c, a) + self.func = lambda i, line: self.replace_add(line, p, r, c, a) elif filter_dict['filter'] == 'prepend_line_num': - self.func = lambda i, l: '%d\t%s' % (i, l) + self.func = lambda i, line: '%d\t%s' % (i, line) elif filter_dict['filter'] == 'append_line_num': - self.func = lambda i, l: '%s\t%d' % (l.rstrip('\r\n'), i) + self.func = lambda i, line: '%s\t%d' % (line.rstrip('\r\n'), i) elif filter_dict['filter'] == 'prepend_text': s = filter_dict['column_text'] - self.func = lambda i, l: '%s\t%s' % (s, l) + self.func = lambda i, line: '%s\t%s' % (s, line) elif filter_dict['filter'] == 'append_text': s = filter_dict['column_text'] - self.func = lambda i, l: '%s\t%s' % (l.rstrip('\r\n'), s) + self.func = lambda i, line: '%s\t%s' % (line.rstrip('\r\n'), s) elif filter_dict['filter'] == 'skip': cnt = filter_dict['count'] - self.func = lambda i, l: l if i > cnt else None + self.func = lambda i, line: line if i > cnt else None elif filter_dict['filter'] == 'normalize': cols = [int(c) - 1 for c in filter_dict['columns']] sep = filter_dict['separator'] - self.func = lambda i, l: self.normalize(l, cols, sep) + self.func = lambda i, line: self.normalize(line, cols, sep) def __iter__(self): return self