Mercurial > repos > iuc > find_nested_alt_orfs
diff macros.xml @ 0:14f4c7a8a962 draft default tip
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/naltorfs/ commit cbedf7b5968b45a08df88d4ad799951d6f50a2bd"
author | iuc |
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date | Mon, 11 Apr 2022 20:37:19 +0000 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/macros.xml Mon Apr 11 20:37:19 2022 +0000 @@ -0,0 +1,63 @@ +<macros> + <token name="@TOOL_VERSION@">0.1.2</token> + <xml name="requirements"> + <requirements> + <requirement type="package" version="@TOOL_VERSION@">naltorfs</requirement> + <yield/> + </requirements> + </xml> + <xml name="translation_table_select_parameter"> + <param argument="--translation_table" type="select" label="Translation table"> + <option value="1" selected="true">Table 1 Standard, SGC0</option> + <option value="2">Table 2 Vertebrate Mitochondrial, SGC1</option> + <option value="3">Table 3 Yeast Mitochondrial, SGC2</option> + <option value="4">Table 4 Mold Mitochondrial, Protozoan Mitochondrial, Coelenterate Mitochondrial, Mycoplasma, Spiroplasma, SGC3</option> + <option value="5">Table 5 Invertebrate Mitochondrial, SGC4</option> + <option value="6">Table 6 Ciliate Nuclear, Dasycladacean Nuclear, Hexamita Nuclear, SGC5</option> + <option value="9">Table 9 Echinoderm Mitochondrial, Flatworm Mitochondrial, SGC8</option> + <option value="10">Table 10 Euplotid Nuclear, SGC9</option> + <option value="11">Table 11 Bacterial, Archaeal, Plant Plastid</option> + <option value="12">Table 12 Alternative Yeast Nuclear</option> + <option value="13">Table 13 Ascidian Mitochondrial</option> + <option value="14">Table 14 Alternative Flatworm Mitochondrial</option> + <option value="15">Table 15 Blepharisma Macronuclear</option> + <option value="16">Table 16 Chlorophycean Mitochondrial</option> + <option value="21">Table 21 Trematode Mitochondrial</option> + <option value="22">Table 22 Scenedesmus obliquus Mitochondrial</option> + <option value="23">Table 23 Thraustochytrium Mitochondrial</option> + <option value="24">Table 24 Pterobranchia Mitochondrial</option> + <option value="25">Table 25 Candidate Division SR1, Gracilibacteria</option> + <option value="26">Table 26 Pachysolen tannophilus Nuclear</option> + <option value="27">Table 27 Karyorelict Nuclear</option> + <option value="28">Table 28 Condylostoma Nuclear</option> + <option value="29">Table 29 Mesodinium Nuclear</option> + <option value="30">Table 30 Peritrich Nuclear</option> + <option value="31">Table 31 Blastocrithidia Nuclear</option> + <option value="32">Table 32 Balanophoraceae Plastid</option> + <option value="33">Table 33 Cephalodiscidae Mitochondrial</option> + </param> + </xml> + <xml name="edam_ontology"> + <edam_topics> + <edam_topic>topic_0622</edam_topic> + <edam_topic>topic_0091</edam_topic> + </edam_topics> + <edam_operations> + <edam_operation>operation_0286</edam_operation> + <edam_operation>operation_0284</edam_operation> + <edam_operation>operation_0436</edam_operation> + <edam_operation>operation_0362</edam_operation> + </edam_operations> + </xml> + <xml name="citations"> + <citations> + <citation type="bibtex"> + @UNPUBLISHED{nAltORFs, + author = "Kommireddy Vasu and Debjit Khan and Iyappan Ramachandiran and Daniel Blankenberg and Paul L. Fox", + title = "Nested Alternate Open Reading Frames and their Encoded Proteins: The Hidden Orfeome", + year = "2022" + } + </citation> + </citations> + </xml> +</macros>