diff test-data/flair.collapse.isoforms.gtf @ 0:57dc46adf2da draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/flair commit e6e3295a4e0168d80b7966684bc21d2863bed108"
author iuc
date Fri, 27 Nov 2020 21:56:08 +0000
parents
children
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/flair.collapse.isoforms.gtf	Fri Nov 27 21:56:08 2020 +0000
@@ -0,0 +1,28 @@
+chrM	FLAIR	transcript	662	1341	.	+	.	gene_id "chrM:000"; transcript_id "ca7655f0-1077-4546-850f-be0f10f50a81";
+chrM	FLAIR	exon	662	1341	.	+	60	gene_id "chrM:000"; transcript_id "ca7655f0-1077-4546-850f-be0f10f50a81"; exon_number "0";
+chrM	FLAIR	transcript	1275	1601	.	+	.	gene_id "chrM:1000"; transcript_id "07a2d20a-8f33-4283-87e2-ee2b28b771f2";
+chrM	FLAIR	exon	1275	1601	.	+	60	gene_id "chrM:1000"; transcript_id "07a2d20a-8f33-4283-87e2-ee2b28b771f2"; exon_number "0";
+chrM	FLAIR	transcript	1682	3211	.	+	.	gene_id "ENST00000387347.2"; transcript_id "7739a708-0dd8-4e16-856c-0488b9378738";
+chrM	FLAIR	exon	1682	3211	.	+	60	gene_id "ENST00000387347.2"; transcript_id "7739a708-0dd8-4e16-856c-0488b9378738"; exon_number "0";
+chrM	FLAIR	transcript	3316	4220	.	+	.	gene_id "ENST00000361390.2"; transcript_id "13557349-20c1-42e2-8477-a31c29e524a3";
+chrM	FLAIR	exon	3316	4220	.	+	60	gene_id "ENST00000361390.2"; transcript_id "13557349-20c1-42e2-8477-a31c29e524a3"; exon_number "0";
+chrM	FLAIR	transcript	4483	5439	.	-	.	gene_id "ENST00000361453.3"; transcript_id "7c64296d-12c2-49bd-a404-70478fff9a62";
+chrM	FLAIR	exon	4483	5439	.	-	60	gene_id "ENST00000361453.3"; transcript_id "7c64296d-12c2-49bd-a404-70478fff9a62"; exon_number "0";
+chrM	FLAIR	transcript	5592	5865	.	+	.	gene_id "chrM:5000"; transcript_id "272f11a9-f8b7-4c23-8526-a36936b8527f";
+chrM	FLAIR	exon	5592	5865	.	+	29	gene_id "chrM:5000"; transcript_id "272f11a9-f8b7-4c23-8526-a36936b8527f"; exon_number "0";
+chrM	FLAIR	transcript	5912	7518	.	+	.	gene_id "ENST00000361624.2"; transcript_id "1804a832-0ae7-4760-bd8c-2b8250455c48";
+chrM	FLAIR	exon	5912	7518	.	+	60	gene_id "ENST00000361624.2"; transcript_id "1804a832-0ae7-4760-bd8c-2b8250455c48"; exon_number "0";
+chrM	FLAIR	transcript	7597	8294	.	+	.	gene_id "ENST00000361739.1"; transcript_id "3065b2ed-affa-4e42-8c6e-b385487325f6";
+chrM	FLAIR	exon	7597	8294	.	+	45	gene_id "ENST00000361739.1"; transcript_id "3065b2ed-affa-4e42-8c6e-b385487325f6"; exon_number "0";
+chrM	FLAIR	transcript	8378	9207	.	+	.	gene_id "ENST00000361899.2"; transcript_id "08c5eaa2-47a2-4813-ae6d-e579904d6416";
+chrM	FLAIR	exon	8378	9207	.	+	42	gene_id "ENST00000361899.2"; transcript_id "08c5eaa2-47a2-4813-ae6d-e579904d6416"; exon_number "0";
+chrM	FLAIR	transcript	9222	9991	.	+	.	gene_id "ENST00000362079.2"; transcript_id "29af7e32-7b11-4c36-ae11-25b54575faea";
+chrM	FLAIR	exon	9222	9991	.	+	60	gene_id "ENST00000362079.2"; transcript_id "29af7e32-7b11-4c36-ae11-25b54575faea"; exon_number "0";
+chrM	FLAIR	transcript	10071	10404	.	+	.	gene_id "ENST00000361227.2"; transcript_id "7258b7cf-cbd2-4dab-928d-bbb5bc115c4c";
+chrM	FLAIR	exon	10071	10404	.	+	60	gene_id "ENST00000361227.2"; transcript_id "7258b7cf-cbd2-4dab-928d-bbb5bc115c4c"; exon_number "0";
+chrM	FLAIR	transcript	10483	12053	.	+	.	gene_id "ENST00000361381.2"; transcript_id "ccdaa81a-848a-4da0-abef-6411c5c3a01e";
+chrM	FLAIR	exon	10483	12053	.	+	60	gene_id "ENST00000361381.2"; transcript_id "ccdaa81a-848a-4da0-abef-6411c5c3a01e"; exon_number "0";
+chrM	FLAIR	transcript	12351	14748	.	+	.	gene_id "ENST00000361567.2"; transcript_id "81c2d0d9-44c7-4f0a-bb58-7b0ab49220a5";
+chrM	FLAIR	exon	12351	14748	.	+	60	gene_id "ENST00000361567.2"; transcript_id "81c2d0d9-44c7-4f0a-bb58-7b0ab49220a5"; exon_number "0";
+chrM	FLAIR	transcript	15972	16569	.	+	.	gene_id "chrM:15000"; transcript_id "2f14a1a9-c356-4568-9a4e-150c8d2038d0";
+chrM	FLAIR	exon	15972	16569	.	+	60	gene_id "chrM:15000"; transcript_id "2f14a1a9-c356-4568-9a4e-150c8d2038d0"; exon_number "0";