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comparison fraggenescan.xml @ 1:2dfb2fba4081 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fraggenescan/ commit 32bd45a5fc79e3096bfdf6d9009f1d396398df1a
author iuc
date Wed, 20 Jul 2022 10:41:48 +0000
parents 1f0a3e4497d4
children
comparison
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0:1f0a3e4497d4 1:2dfb2fba4081
1 <tool id="fraggenescan" name="FragGeneScan" version="@WRAPPER_VERSION@.0"> 1 <tool id="fraggenescan" name="FragGeneScan" version="@WRAPPER_VERSION@.0">
2 <description>for finding (fragmented) genes in short reads</description> 2 <description>for finding (fragmented) genes in short reads</description>
3 <xrefs>
4 <xref type="bio.tools">fraggenescan</xref>
5 </xrefs>
3 <macros> 6 <macros>
4 <token name="@WRAPPER_VERSION@">1.30</token> 7 <token name="@WRAPPER_VERSION@">1.30</token>
5 </macros> 8 </macros>
6 <requirements> 9 <requirements>
7 <requirement type="package" version="@WRAPPER_VERSION@">fraggenescan</requirement> 10 <requirement type="package" version="@WRAPPER_VERSION@">fraggenescan</requirement>
48 <test> 51 <test>
49 <param name="genome" value="contigs.fasta"/> 52 <param name="genome" value="contigs.fasta"/>
50 <param name="complete" value="False"/> 53 <param name="complete" value="False"/>
51 <param name="train" value="complete"/> 54 <param name="train" value="complete"/>
52 <output name="coord" ftype="tabular" value="contigs.out"/> 55 <output name="coord" ftype="tabular" value="contigs.out"/>
53 <output name="nt_seq" ftype="fasta" value="contigs.ffn"/> 56 <output name="nt_seq" ftype="fasta" value="contigs.ffn" sort="true"/>
54 <output name="prot_seq" ftype="fasta" value="contigs.faa"/> 57 <output name="prot_seq" ftype="fasta" value="contigs.faa" sort="true"/>
55 <output name="gff" ftype="gff" value="contigs.gff"/> 58 <output name="gff" ftype="gff" value="contigs.gff"/>
56 </test> 59 </test>
57 <test> 60 <test>
58 <param name="genome" value="NC_000913.fasta"/> 61 <param name="genome" value="NC_000913.fasta"/>
59 <param name="complete" value="True"/> 62 <param name="complete" value="True"/>
60 <param name="train" value="complete"/> 63 <param name="train" value="complete"/>
61 <output name="coord" ftype="tabular" value="NC_000913.out"/> 64 <output name="coord" ftype="tabular" value="NC_000913.out"/>
62 <output name="nt_seq" ftype="fasta" value="NC_000913.ffn"/> 65 <output name="nt_seq" ftype="fasta" value="NC_000913.ffn" sort="true"/>
63 <output name="prot_seq" ftype="fasta" value="NC_000913.faa"/> 66 <output name="prot_seq" ftype="fasta" value="NC_000913.faa" sort="true"/>
64 <output name="gff" ftype="gff" value="NC_000913.gff"/> 67 <output name="gff" ftype="gff" value="NC_000913.gff"/>
65 </test> 68 </test>
66 <test> 69 <test>
67 <param name="genome" value="NC_000913-454.fasta"/> 70 <param name="genome" value="NC_000913-454.fasta"/>
68 <param name="complete" value="False"/> 71 <param name="complete" value="False"/>
69 <param name="train" value="454_10"/> 72 <param name="train" value="454_10"/>
70 <output name="coord" ftype="tabular" value="NC_000913-454.out"/> 73 <output name="coord" ftype="tabular" value="NC_000913-454.out"/>
71 <output name="nt_seq" ftype="fasta" value="NC_000913-454.ffn"/> 74 <output name="nt_seq" ftype="fasta" value="NC_000913-454.ffn" sort="true"/>
72 <output name="prot_seq" ftype="fasta" value="NC_000913-454.faa"/> 75 <output name="prot_seq" ftype="fasta" value="NC_000913-454.faa" sort="true"/>
73 <output name="gff" ftype="gff" value="NC_000913-454.gff"/> 76 <output name="gff" ftype="gff" value="NC_000913-454.gff"/>
74 </test> 77 </test>
75 </tests> 78 </tests>
76 <help><![CDATA[ 79 <help><![CDATA[
77 **What it does** 80 **What it does**