# HG changeset patch
# User iuc
# Date 1658313708 0
# Node ID 2dfb2fba4081f09f44c51fc3bc8401043a090563
# Parent  1f0a3e4497d42d46b0ec10ac3394c0bfe517a962
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fraggenescan/ commit 32bd45a5fc79e3096bfdf6d9009f1d396398df1a

diff -r 1f0a3e4497d4 -r 2dfb2fba4081 fraggenescan.xml
--- a/fraggenescan.xml	Wed Sep 06 13:23:14 2017 -0400
+++ b/fraggenescan.xml	Wed Jul 20 10:41:48 2022 +0000
@@ -1,5 +1,8 @@
 <tool id="fraggenescan" name="FragGeneScan" version="@WRAPPER_VERSION@.0">
     <description>for finding (fragmented) genes in short reads</description>
+    <xrefs>
+        <xref type="bio.tools">fraggenescan</xref>
+    </xrefs>
     <macros>
         <token name="@WRAPPER_VERSION@">1.30</token>
     </macros>
@@ -50,8 +53,8 @@
             <param name="complete" value="False"/>
             <param name="train" value="complete"/>
             <output name="coord" ftype="tabular" value="contigs.out"/>
-            <output name="nt_seq" ftype="fasta" value="contigs.ffn"/>
-            <output name="prot_seq" ftype="fasta" value="contigs.faa"/>
+            <output name="nt_seq" ftype="fasta" value="contigs.ffn" sort="true"/>
+            <output name="prot_seq" ftype="fasta" value="contigs.faa" sort="true"/>
             <output name="gff" ftype="gff" value="contigs.gff"/>
         </test>
         <test>
@@ -59,8 +62,8 @@
             <param name="complete" value="True"/>
             <param name="train" value="complete"/>
             <output name="coord" ftype="tabular" value="NC_000913.out"/>
-            <output name="nt_seq" ftype="fasta" value="NC_000913.ffn"/>
-            <output name="prot_seq" ftype="fasta" value="NC_000913.faa"/>
+            <output name="nt_seq" ftype="fasta" value="NC_000913.ffn" sort="true"/>
+            <output name="prot_seq" ftype="fasta" value="NC_000913.faa" sort="true"/>
             <output name="gff" ftype="gff" value="NC_000913.gff"/>
         </test>
         <test>
@@ -68,8 +71,8 @@
             <param name="complete" value="False"/>
             <param name="train" value="454_10"/>
             <output name="coord" ftype="tabular" value="NC_000913-454.out"/>
-            <output name="nt_seq" ftype="fasta" value="NC_000913-454.ffn"/>
-            <output name="prot_seq" ftype="fasta" value="NC_000913-454.faa"/>
+            <output name="nt_seq" ftype="fasta" value="NC_000913-454.ffn" sort="true"/>
+            <output name="prot_seq" ftype="fasta" value="NC_000913-454.faa" sort="true"/>
             <output name="gff" ftype="gff" value="NC_000913-454.gff"/>
         </test>
     </tests>