Mercurial > repos > iuc > freyja_demix

diff freyja_demix.xml @ 1:c0a0e79d7196 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/freyja commit 26266f43c51f3f711ecd3a7dc6aea581a3b57fc5
author iuc
date Fri, 07 Jul 2023 05:51:15 +0000
parents fc6252e78d5b
children
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line diff
--- a/freyja_demix.xml	Thu Jul 28 09:26:02 2022 +0000
+++ b/freyja_demix.xml	Fri Jul 07 05:51:15 2023 +0000
@@ -30,6 +30,7 @@
         --meta '$meta'
     #end if
     $confirmedonly
+    $wgisaid
     @CUSTOM_BARCODES_COMMAND@
     --covcut $depth_cutoff
     --output abundances_raw.tsv &&
@@ -73,9 +74,10 @@
                 <param name="source" value="manual"/>
                 <param name="name" value="samplename"/>
             </conditional>
-            <output name="abundances" ftype="tabular">
+            <output name="abundances">
                 <assert_contents>
-                    <has_text text="samplename"/>
+                    <has_n_columns n="2" />
+                    <has_text text="AY.48"/>
                 </assert_contents>
             </output>
         </test>
@@ -89,9 +91,10 @@
             <conditional name="sample_name">
                 <param name="source" value="auto"/>
             </conditional>
-            <output name="abundances" ftype="tabular">
+            <output name="abundances">
                 <assert_contents>
-                    <has_text text="summarized"/>
+                    <has_n_columns n="2" />
+                    <has_text text="AY.48"/>
                 </assert_contents>
             </output>
         </test>