Mercurial > repos > iuc > funannotate_annotate

annotate README.md @ 3:14f588312c56 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload commit 4ea03fe4266665334b99b4a4d34e5845fe03d383"
author iuc
date Thu, 25 Nov 2021 16:20:29 +0000
parents a5baa4ff168d
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
a5baa4ff168d "planemo upload commit 87560553f1dbbd3e0ab7d7157fa5a7f32f61dca1"
iuc
parents:
diff changeset
1 # Funannotate
a5baa4ff168d "planemo upload commit 87560553f1dbbd3e0ab7d7157fa5a7f32f61dca1"
iuc
parents:
diff changeset
2
a5baa4ff168d "planemo upload commit 87560553f1dbbd3e0ab7d7157fa5a7f32f61dca1"
iuc
parents:
diff changeset
3 Funannotate can use GeneMark to predict gene, but due to licensing issues, we are not allowed to distribute GeneMark automatically.
a5baa4ff168d "planemo upload commit 87560553f1dbbd3e0ab7d7157fa5a7f32f61dca1"
iuc
parents:
diff changeset
4
a5baa4ff168d "planemo upload commit 87560553f1dbbd3e0ab7d7157fa5a7f32f61dca1"
iuc
parents:
diff changeset
5 If you want to use it, the Galaxy administrator needs to install it GeneMark following the instructions on https://github.com/nextgenusfs/funannotate, and set the `GENEMARK_PATH` variable on the job destination.