Mercurial > repos > iuc > funannotate_annotate

annotate test-data/predict_scratch/Genus_species.stats.json @ 0:a5baa4ff168d draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload commit 87560553f1dbbd3e0ab7d7157fa5a7f32f61dca1"
author iuc
date Mon, 04 Oct 2021 19:39:38 +0000
parents
children 9feee7fc49a1
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a5baa4ff168d "planemo upload commit 87560553f1dbbd3e0ab7d7157fa5a7f32f61dca1"
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1 {
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2 "format": "annotation",
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3 "command": "/home/abretaud/miniconda3/envs/__funannotate@1.8.7/bin/funannotate predict --input /tmp/tmpm833xrq1/files/e/1/c/dataset_e1c34c74-e579-4cab-b0ed-5ce938ce4e4b.dat --out output --database /home/abretaud/.planemo/planemo_tmp_yntx6ieu/test-data/funannotate_db --species Genus species --isolate --strain --organism other --ploidy 1 --SeqCenter CFMR --SeqAccession 12345 --name FUN_ --numbering 1 --p2g_pident 80 --p2g_prefilter diamond --min_training_models 3 --busco_seed_species fly --busco_db insecta --evm-partition-interval 1500 --min_intronlen 10 --max_intronlen 3000 --min_protlen 50 --repeat_filter overlap blast --cpus 1",
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4 "organism": "Genus_species",
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5 "software": {
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6 "name": "funannotate",
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7 "version": "1.8.7",
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8 "date": "2021-07-21",
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9 "resources": {
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15 },
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116 "pct_exon_overlap_protein_evidence": 11.9
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117 }
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118 }
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119 }