Mercurial > repos > iuc > funannotate_annotate

annotate macros.xml @ 11:9c15ca7e764e draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/funannotate commit 9e3708d04faea0f1be4ea8918e859d6f2c7eb31d
author iuc
date Wed, 26 Jun 2024 09:41:52 +0000
parents 3bbe70fef6df
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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1 <?xml version="1.0"?>
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2 <macros>
5
9feee7fc49a1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/funannotate commit 2589d2785ca90160a22a5fe14e03311e189ea51d
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3 <token name="@TOOL_VERSION@">1.8.15</token>
11
9c15ca7e764e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/funannotate commit 9e3708d04faea0f1be4ea8918e859d6f2c7eb31d
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4 <token name="@VERSION_SUFFIX@">5</token>
8
756376aeb1ae planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/funannotate commit 1102ae206f5dfb9322d28b23d224eb67a7b80a1c
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5 <xml name="biotools">
756376aeb1ae planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/funannotate commit 1102ae206f5dfb9322d28b23d224eb67a7b80a1c
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6 <xrefs>
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7 <xref type="bio.tools">
756376aeb1ae planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/funannotate commit 1102ae206f5dfb9322d28b23d224eb67a7b80a1c
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8 funannotate
756376aeb1ae planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/funannotate commit 1102ae206f5dfb9322d28b23d224eb67a7b80a1c
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9 </xref>
756376aeb1ae planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/funannotate commit 1102ae206f5dfb9322d28b23d224eb67a7b80a1c
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10 </xrefs>
756376aeb1ae planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/funannotate commit 1102ae206f5dfb9322d28b23d224eb67a7b80a1c
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11 </xml>
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12 <xml name="requirements">
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13 <requirement type="package" version="@TOOL_VERSION@">funannotate</requirement>
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14 </xml>
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15
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16 <xml name="citations">
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17 <citations>
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18 <citation type="doi">10.5281/zenodo.4054262</citation>
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19 </citations>
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20 </xml>
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21
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22 <xml name="augustus_species">
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23 <!-- list generated from a Funannotate database directory, listing trained_species/* -->
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24 <option value="adorsata">adorsata</option>
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25 <option value="aedes">aedes</option>
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26 <option value="amphimedon">amphimedon</option>
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27 <option value="ancylostoma_ceylanicum">ancylostoma_ceylanicum</option>
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28 <option value="anidulans">anidulans</option>
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29 <option value="arabidopsis">arabidopsis</option>
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30 <option value="aspergillus_fumigatus">aspergillus_fumigatus</option>
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31 <option value="aspergillus_nidulans">aspergillus_nidulans</option>
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32 <option value="aspergillus_oryzae">aspergillus_oryzae</option>
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33 <option value="aspergillus_terreus">aspergillus_terreus</option>
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34 <option value="bombus_impatiens1">bombus_impatiens1</option>
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35 <option value="bombus_terrestris2">bombus_terrestris2</option>
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36 <option value="botrytis_cinerea">botrytis_cinerea</option>
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37 <option value="b_pseudomallei">b_pseudomallei</option>
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38 <option value="brugia">brugia</option>
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39 <option value="cacao">cacao</option>
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40 <option value="caenorhabditis">caenorhabditis</option>
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41 <option value="camponotus_floridanus">camponotus_floridanus</option>
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42 <option value="candida_albicans">candida_albicans</option>
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43 <option value="candida_guilliermondii">candida_guilliermondii</option>
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44 <option value="candida_tropicalis">candida_tropicalis</option>
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45 <option value="c_elegans_trsk">c_elegans_trsk</option>
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46 <option value="chaetomium_globosum">chaetomium_globosum</option>
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47 <option value="chicken">chicken</option>
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48 <option value="chiloscyllium">chiloscyllium</option>
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49 <option value="chlamy2011">chlamy2011</option>
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50 <option value="chlamydomonas">chlamydomonas</option>
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51 <option value="chlorella">chlorella</option>
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52 <option value="ciona">ciona</option>
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53 <option value="coccidioides_immitis">coccidioides_immitis</option>
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54 <option value="Conidiobolus_coronatus">Conidiobolus_coronatus</option>
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55 <option value="coprinus">coprinus</option>
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56 <option value="coprinus_cinereus">coprinus_cinereus</option>
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57 <option value="coyote_tobacco">coyote_tobacco</option>
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58 <option value="cryptococcus">cryptococcus</option>
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59 <option value="cryptococcus_neoformans_gattii">cryptococcus_neoformans_gattii</option>
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60 <option value="cryptococcus_neoformans_neoformans_B">cryptococcus_neoformans_neoformans_B</option>
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61 <option value="cryptococcus_neoformans_neoformans_JEC21">cryptococcus_neoformans_neoformans_JEC21</option>
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62 <option value="culex">culex</option>
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63 <option value="debaryomyces_hansenii">debaryomyces_hansenii</option>
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64 <option value="E_coli_K12">E_coli_K12</option>
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65 <option value="elephant_shark">elephant_shark</option>
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66 <option value="encephalitozoon_cuniculi_GB">encephalitozoon_cuniculi_GB</option>
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67 <option value="eremothecium_gossypii">eremothecium_gossypii</option>
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68 <option value="fly">fly</option>
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69 <option value="fly_exp">fly_exp</option>
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70 <option value="fusarium">fusarium</option>
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71 <option value="fusarium_graminearum">fusarium_graminearum</option>
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72 <option value="galdieria">galdieria</option>
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73 <option value="generic">generic</option>
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74 <option value="heliconius_melpomene1">heliconius_melpomene1</option>
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75 <option value="histoplasma">histoplasma</option>
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76 <option value="histoplasma_capsulatum">histoplasma_capsulatum</option>
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77 <option value="honeybee1">honeybee1</option>
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78 <option value="human">human</option>
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79 <option value="japaneselamprey">japaneselamprey</option>
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80 <option value="kluyveromyces_lactis">kluyveromyces_lactis</option>
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81 <option value="laccaria_bicolor">laccaria_bicolor</option>
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82 <option value="leishmania_tarentolae">leishmania_tarentolae</option>
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83 <option value="lodderomyces_elongisporus">lodderomyces_elongisporus</option>
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84 <option value="magnaporthe_grisea">magnaporthe_grisea</option>
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85 <option value="maize">maize</option>
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86 <option value="maize5">maize5</option>
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87 <option value="mnemiopsis_leidyi">mnemiopsis_leidyi</option>
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88 <option value="nasonia">nasonia</option>
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89 <option value="nematostella_vectensis">nematostella_vectensis</option>
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90 <option value="neurospora">neurospora</option>
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91 <option value="neurospora_crassa">neurospora_crassa</option>
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92 <option value="parasteatoda">parasteatoda</option>
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93 <option value="pchrysosporium">pchrysosporium</option>
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94 <option value="pea_aphid">pea_aphid</option>
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95 <option value="pfalciparum">pfalciparum</option>
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96 <option value="phanerochaete_chrysosporium">phanerochaete_chrysosporium</option>
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97 <option value="pichia_stipitis">pichia_stipitis</option>
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98 <option value="pisaster">pisaster</option>
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99 <option value="pneumocystis">pneumocystis</option>
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100 <option value="rhincodon">rhincodon</option>
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101 <option value="rhizopus_oryzae">rhizopus_oryzae</option>
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102 <option value="rhodnius">rhodnius</option>
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103 <option value="rice">rice</option>
a5baa4ff168d "planemo upload commit 87560553f1dbbd3e0ab7d7157fa5a7f32f61dca1"
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parents:
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104 <option value="saccharomyces">saccharomyces</option>
a5baa4ff168d "planemo upload commit 87560553f1dbbd3e0ab7d7157fa5a7f32f61dca1"
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parents:
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105 <option value="saccharomyces_cerevisiae_rm11-1a_1">saccharomyces_cerevisiae_rm11-1a_1</option>
a5baa4ff168d "planemo upload commit 87560553f1dbbd3e0ab7d7157fa5a7f32f61dca1"
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106 <option value="saccharomyces_cerevisiae_S288C">saccharomyces_cerevisiae_S288C</option>
a5baa4ff168d "planemo upload commit 87560553f1dbbd3e0ab7d7157fa5a7f32f61dca1"
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parents:
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107 <option value="s_aureus">s_aureus</option>
a5baa4ff168d "planemo upload commit 87560553f1dbbd3e0ab7d7157fa5a7f32f61dca1"
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parents:
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108 <option value="schistosoma">schistosoma</option>
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parents:
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109 <option value="schistosoma2">schistosoma2</option>
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parents:
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110 <option value="schizosaccharomyces_pombe">schizosaccharomyces_pombe</option>
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parents:
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111 <option value="scyliorhinus">scyliorhinus</option>
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parents:
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112 <option value="sealamprey">sealamprey</option>
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parents:
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113 <option value="s_pneumoniae">s_pneumoniae</option>
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parents:
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114 <option value="strongylocentrotus_purpuratus">strongylocentrotus_purpuratus</option>
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parents:
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115 <option value="sulfolobus_solfataricus">sulfolobus_solfataricus</option>
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parents:
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116 <option value="template_prokaryotic">template_prokaryotic</option>
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parents:
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117 <option value="tetrahymena">tetrahymena</option>
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parents:
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118 <option value="thermoanaerobacter_tengcongensis">thermoanaerobacter_tengcongensis</option>
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parents:
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119 <option value="tomato">tomato</option>
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parents:
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120 <option value="toxoplasma">toxoplasma</option>
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parents:
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121 <option value="tribolium2012">tribolium2012</option>
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parents:
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122 <option value="trichinella">trichinella</option>
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parents:
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123 <option value="ustilago">ustilago</option>
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parents:
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124 <option value="ustilago_maydis">ustilago_maydis</option>
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parents:
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125 <option value="verticillium_albo_atrum1">verticillium_albo_atrum1</option>
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parents:
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126 <option value="verticillium_longisporum1">verticillium_longisporum1</option>
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parents:
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127 <option value="volvox">volvox</option>
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parents:
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128 <option value="wheat">wheat</option>
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parents:
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129 <option value="Xipophorus_maculatus">Xipophorus_maculatus</option>
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parents:
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130 <option value="yarrowia_lipolytica">yarrowia_lipolytica</option>
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131 <option value="zebrafish">zebrafish</option>
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parents:
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132 </xml>
a5baa4ff168d "planemo upload commit 87560553f1dbbd3e0ab7d7157fa5a7f32f61dca1"
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133
a5baa4ff168d "planemo upload commit 87560553f1dbbd3e0ab7d7157fa5a7f32f61dca1"
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parents:
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134 <xml name="busco_species">
a5baa4ff168d "planemo upload commit 87560553f1dbbd3e0ab7d7157fa5a7f32f61dca1"
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parents:
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135 <!-- list generated from a Funannotate database directory, with the "funannotate database -show-buscos command" -->
a5baa4ff168d "planemo upload commit 87560553f1dbbd3e0ab7d7157fa5a7f32f61dca1"
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parents:
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136 <option value="eukaryota">eukaryota</option>
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parents:
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137 <option value="metazoa">metazoa</option>
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parents:
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138 <option value="nematoda">nematoda</option>
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parents:
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139 <option value="arthropoda">arthropoda</option>
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parents:
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140 <option value="insecta">insecta</option>
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parents:
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141 <option value="endopterygota">endopterygota</option>
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parents:
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142 <option value="hymenoptera">hymenoptera</option>
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parents:
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143 <option value="diptera">diptera</option>
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parents:
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144 <option value="vertebrata">vertebrata</option>
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parents:
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145 <option value="actinopterygii">actinopterygii</option>
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parents:
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146 <option value="tetrapoda">tetrapoda</option>
a5baa4ff168d "planemo upload commit 87560553f1dbbd3e0ab7d7157fa5a7f32f61dca1"
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parents:
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147 <option value="aves">aves</option>
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parents:
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148 <option value="mammalia">mammalia</option>
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parents:
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149 <option value="euarchontoglires">euarchontoglires</option>
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parents:
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150 <option value="laurasiatheria">laurasiatheria</option>
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parents:
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151 <option value="fungi">fungi</option>
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parents:
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152 <option value="dikarya">dikarya</option>
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parents:
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153 <option value="ascomycota">ascomycota</option>
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parents:
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154 <option value="pezizomycotina">pezizomycotina</option>
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parents:
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155 <option value="eurotiomycetes">eurotiomycetes</option>
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parents:
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156 <option value="sordariomycetes">sordariomycetes</option>
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parents:
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157 <option value="saccharomycetes">saccharomycetes</option>
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parents:
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158 <option value="saccharomycetales">saccharomycetales</option>
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parents:
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159 <option value="basidiomycota">basidiomycota</option>
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parents:
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160 <option value="microsporidia">microsporidia</option>
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parents:
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161 <option value="embryophyta">embryophyta</option>
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parents:
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162 <option value="protists">protists</option>
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parents:
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163 <option value="alveolata_stramenophiles">alveolata_stramenophiles</option>
1
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parents: 0
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164 <!-- These datasets are additional BUSCO orthodb 10 datasets, they are not yet bundled
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parents: 0
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165 with funannonate db, but they can be used safely. -->
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166 <option value="acidobacteria_odb10">acidobacteria (orthodb 10)</option>
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167 <option value="aconoidasida_odb10">aconoidasida (orthodb 10)</option>
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168 <option value="actinobacteria_class_odb10">actinobacteria_class (orthodb 10)</option>
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parents: 0
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169 <option value="actinobacteria_phylum_odb10">actinobacteria_phylum (orthodb 10)</option>
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parents: 0
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170 <option value="actinopterygii_odb10">actinopterygii (orthodb 10)</option>
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171 <option value="agaricales_odb10">agaricales (orthodb 10)</option>
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parents: 0
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172 <option value="agaricomycetes_odb10">agaricomycetes (orthodb 10)</option>
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parents: 0
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173 <option value="alphabaculovirus_odb10">alphabaculovirus (orthodb 10)</option>
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174 <option value="alphaherpesvirinae_odb10">alphaherpesvirinae (orthodb 10)</option>
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parents: 0
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175 <option value="alphaproteobacteria_odb10">alphaproteobacteria (orthodb 10)</option>
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parents: 0
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176 <option value="alteromonadales_odb10">alteromonadales (orthodb 10)</option>
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177 <option value="alveolata_odb10">alveolata (orthodb 10)</option>
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parents: 0
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178 <option value="apicomplexa_odb10">apicomplexa (orthodb 10)</option>
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179 <option value="aquificae_odb10">aquificae (orthodb 10)</option>
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180 <option value="arachnida_odb10">arachnida (orthodb 10)</option>
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parents: 0
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181 <option value="archaea_odb10">archaea (orthodb 10)</option>
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parents: 0
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182 <option value="arthropoda_odb10">arthropoda (orthodb 10)</option>
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parents: 0
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183 <option value="ascomycota_odb10">ascomycota (orthodb 10)</option>
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parents: 0
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184 <option value="aves_odb10">aves (orthodb 10)</option>
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parents: 0
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185 <option value="aviadenovirus_odb10">aviadenovirus (orthodb 10)</option>
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parents: 0
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186 <option value="bacillales_odb10">bacillales (orthodb 10)</option>
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187 <option value="bacilli_odb10">bacilli (orthodb 10)</option>
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parents: 0
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188 <option value="bacteria_odb10">bacteria (orthodb 10)</option>
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parents: 0
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189 <option value="bacteroidales_odb10">bacteroidales (orthodb 10)</option>
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190 <option value="bacteroidetes-chlorobi_group_odb10">bacteroidetes-chlorobi_group (orthodb 10)</option>
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parents: 0
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191 <option value="bacteroidetes_odb10">bacteroidetes (orthodb 10)</option>
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parents: 0
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192 <option value="bacteroidia_odb10">bacteroidia (orthodb 10)</option>
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parents: 0
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193 <option value="baculoviridae_odb10">baculoviridae (orthodb 10)</option>
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parents: 0
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194 <option value="basidiomycota_odb10">basidiomycota (orthodb 10)</option>
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parents: 0
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195 <option value="bclasvirinae_odb10">bclasvirinae (orthodb 10)</option>
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parents: 0
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196 <option value="betabaculovirus_odb10">betabaculovirus (orthodb 10)</option>
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parents: 0
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197 <option value="betaherpesvirinae_odb10">betaherpesvirinae (orthodb 10)</option>
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parents: 0
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198 <option value="betaproteobacteria_odb10">betaproteobacteria (orthodb 10)</option>
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parents: 0
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199 <option value="boletales_odb10">boletales (orthodb 10)</option>
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parents: 0
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200 <option value="brassicales_odb10">brassicales (orthodb 10)</option>
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parents: 0
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201 <option value="burkholderiales_odb10">burkholderiales (orthodb 10)</option>
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parents: 0
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202 <option value="campylobacterales_odb10">campylobacterales (orthodb 10)</option>
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parents: 0
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203 <option value="capnodiales_odb10">capnodiales (orthodb 10)</option>
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parents: 0
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204 <option value="carnivora_odb10">carnivora (orthodb 10)</option>
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205 <option value="cellvibrionales_odb10">cellvibrionales (orthodb 10)</option>
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206 <option value="cetartiodactyla_odb10">cetartiodactyla (orthodb 10)</option>
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diff changeset
207 <option value="chaetothyriales_odb10">chaetothyriales (orthodb 10)</option>
78407487f758 "planemo upload commit d1ebc78155f57c87d8e82c9855b176428e9803ad"
iuc
parents: 0
diff changeset
208 <option value="cheoctovirus_odb10">cheoctovirus (orthodb 10)</option>
78407487f758 "planemo upload commit d1ebc78155f57c87d8e82c9855b176428e9803ad"
iuc
parents: 0
diff changeset
209 <option value="chlamydiae_odb10">chlamydiae (orthodb 10)</option>
78407487f758 "planemo upload commit d1ebc78155f57c87d8e82c9855b176428e9803ad"
iuc
parents: 0
diff changeset
210 <option value="chlorobi_odb10">chlorobi (orthodb 10)</option>
78407487f758 "planemo upload commit d1ebc78155f57c87d8e82c9855b176428e9803ad"
iuc
parents: 0
diff changeset
211 <option value="chloroflexi_odb10">chloroflexi (orthodb 10)</option>
78407487f758 "planemo upload commit d1ebc78155f57c87d8e82c9855b176428e9803ad"
iuc
parents: 0
diff changeset
212 <option value="chlorophyta_odb10">chlorophyta (orthodb 10)</option>
78407487f758 "planemo upload commit d1ebc78155f57c87d8e82c9855b176428e9803ad"
iuc
parents: 0
diff changeset
213 <option value="chordopoxvirinae_odb10">chordopoxvirinae (orthodb 10)</option>
78407487f758 "planemo upload commit d1ebc78155f57c87d8e82c9855b176428e9803ad"
iuc
parents: 0
diff changeset
214 <option value="chromatiales_odb10">chromatiales (orthodb 10)</option>
78407487f758 "planemo upload commit d1ebc78155f57c87d8e82c9855b176428e9803ad"
iuc
parents: 0
diff changeset
215 <option value="chroococcales_odb10">chroococcales (orthodb 10)</option>
78407487f758 "planemo upload commit d1ebc78155f57c87d8e82c9855b176428e9803ad"
iuc
parents: 0
diff changeset
216 <option value="clostridia_odb10">clostridia (orthodb 10)</option>
78407487f758 "planemo upload commit d1ebc78155f57c87d8e82c9855b176428e9803ad"
iuc
parents: 0
diff changeset
217 <option value="clostridiales_odb10">clostridiales (orthodb 10)</option>
78407487f758 "planemo upload commit d1ebc78155f57c87d8e82c9855b176428e9803ad"
iuc
parents: 0
diff changeset
218 <option value="coccidia_odb10">coccidia (orthodb 10)</option>
78407487f758 "planemo upload commit d1ebc78155f57c87d8e82c9855b176428e9803ad"
iuc
parents: 0
diff changeset
219 <option value="coriobacteriales_odb10">coriobacteriales (orthodb 10)</option>
78407487f758 "planemo upload commit d1ebc78155f57c87d8e82c9855b176428e9803ad"
iuc
parents: 0
diff changeset
220 <option value="coriobacteriia_odb10">coriobacteriia (orthodb 10)</option>
78407487f758 "planemo upload commit d1ebc78155f57c87d8e82c9855b176428e9803ad"
iuc
parents: 0
diff changeset
221 <option value="corynebacteriales_odb10">corynebacteriales (orthodb 10)</option>
78407487f758 "planemo upload commit d1ebc78155f57c87d8e82c9855b176428e9803ad"
iuc
parents: 0
diff changeset
222 <option value="cyanobacteria_odb10">cyanobacteria (orthodb 10)</option>
78407487f758 "planemo upload commit d1ebc78155f57c87d8e82c9855b176428e9803ad"
iuc
parents: 0
diff changeset
223 <option value="cyprinodontiformes_odb10">cyprinodontiformes (orthodb 10)</option>
78407487f758 "planemo upload commit d1ebc78155f57c87d8e82c9855b176428e9803ad"
iuc
parents: 0
diff changeset
224 <option value="cytophagales_odb10">cytophagales (orthodb 10)</option>
78407487f758 "planemo upload commit d1ebc78155f57c87d8e82c9855b176428e9803ad"
iuc
parents: 0
diff changeset
225 <option value="cytophagia_odb10">cytophagia (orthodb 10)</option>
78407487f758 "planemo upload commit d1ebc78155f57c87d8e82c9855b176428e9803ad"
iuc
parents: 0
diff changeset
226 <option value="delta-epsilon-subdivisions_odb10">delta-epsilon-subdivisions (orthodb 10)</option>
78407487f758 "planemo upload commit d1ebc78155f57c87d8e82c9855b176428e9803ad"
iuc
parents: 0
diff changeset
227 <option value="deltaproteobacteria_odb10">deltaproteobacteria (orthodb 10)</option>
78407487f758 "planemo upload commit d1ebc78155f57c87d8e82c9855b176428e9803ad"
iuc
parents: 0
diff changeset
228 <option value="desulfobacterales_odb10">desulfobacterales (orthodb 10)</option>
78407487f758 "planemo upload commit d1ebc78155f57c87d8e82c9855b176428e9803ad"
iuc
parents: 0
diff changeset
229 <option value="desulfovibrionales_odb10">desulfovibrionales (orthodb 10)</option>
78407487f758 "planemo upload commit d1ebc78155f57c87d8e82c9855b176428e9803ad"
iuc
parents: 0
diff changeset
230 <option value="desulfurococcales_odb10">desulfurococcales (orthodb 10)</option>
78407487f758 "planemo upload commit d1ebc78155f57c87d8e82c9855b176428e9803ad"
iuc
parents: 0
diff changeset
231 <option value="desulfuromonadales_odb10">desulfuromonadales (orthodb 10)</option>
78407487f758 "planemo upload commit d1ebc78155f57c87d8e82c9855b176428e9803ad"
iuc
parents: 0
diff changeset
232 <option value="diptera_odb10">diptera (orthodb 10)</option>
78407487f758 "planemo upload commit d1ebc78155f57c87d8e82c9855b176428e9803ad"
iuc
parents: 0
diff changeset
233 <option value="dothideomycetes_odb10">dothideomycetes (orthodb 10)</option>
78407487f758 "planemo upload commit d1ebc78155f57c87d8e82c9855b176428e9803ad"
iuc
parents: 0
diff changeset
234 <option value="embryophyta_odb10">embryophyta (orthodb 10)</option>
78407487f758 "planemo upload commit d1ebc78155f57c87d8e82c9855b176428e9803ad"
iuc
parents: 0
diff changeset
235 <option value="endopterygota_odb10">endopterygota (orthodb 10)</option>
78407487f758 "planemo upload commit d1ebc78155f57c87d8e82c9855b176428e9803ad"
iuc
parents: 0
diff changeset
236 <option value="enquatrovirus_odb10">enquatrovirus (orthodb 10)</option>
78407487f758 "planemo upload commit d1ebc78155f57c87d8e82c9855b176428e9803ad"
iuc
parents: 0
diff changeset
237 <option value="enterobacterales_odb10">enterobacterales (orthodb 10)</option>
78407487f758 "planemo upload commit d1ebc78155f57c87d8e82c9855b176428e9803ad"
iuc
parents: 0
diff changeset
238 <option value="entomoplasmatales_odb10">entomoplasmatales (orthodb 10)</option>
78407487f758 "planemo upload commit d1ebc78155f57c87d8e82c9855b176428e9803ad"
iuc
parents: 0
diff changeset
239 <option value="epsilonproteobacteria_odb10">epsilonproteobacteria (orthodb 10)</option>
78407487f758 "planemo upload commit d1ebc78155f57c87d8e82c9855b176428e9803ad"
iuc
parents: 0
diff changeset
240 <option value="euarchontoglires_odb10">euarchontoglires (orthodb 10)</option>
78407487f758 "planemo upload commit d1ebc78155f57c87d8e82c9855b176428e9803ad"
iuc
parents: 0
diff changeset
241 <option value="eudicots_odb10">eudicots (orthodb 10)</option>
78407487f758 "planemo upload commit d1ebc78155f57c87d8e82c9855b176428e9803ad"
iuc
parents: 0
diff changeset
242 <option value="euglenozoa_odb10">euglenozoa (orthodb 10)</option>
78407487f758 "planemo upload commit d1ebc78155f57c87d8e82c9855b176428e9803ad"
iuc
parents: 0
diff changeset
243 <option value="eukaryota_odb10">eukaryota (orthodb 10)</option>
78407487f758 "planemo upload commit d1ebc78155f57c87d8e82c9855b176428e9803ad"
iuc
parents: 0
diff changeset
244 <option value="eurotiales_odb10">eurotiales (orthodb 10)</option>
78407487f758 "planemo upload commit d1ebc78155f57c87d8e82c9855b176428e9803ad"
iuc
parents: 0
diff changeset
245 <option value="eurotiomycetes_odb10">eurotiomycetes (orthodb 10)</option>
78407487f758 "planemo upload commit d1ebc78155f57c87d8e82c9855b176428e9803ad"
iuc
parents: 0
diff changeset
246 <option value="euryarchaeota_odb10">euryarchaeota (orthodb 10)</option>
78407487f758 "planemo upload commit d1ebc78155f57c87d8e82c9855b176428e9803ad"
iuc
parents: 0
diff changeset
247 <option value="eutheria_odb10">eutheria (orthodb 10)</option>
78407487f758 "planemo upload commit d1ebc78155f57c87d8e82c9855b176428e9803ad"
iuc
parents: 0
diff changeset
248 <option value="fabales_odb10">fabales (orthodb 10)</option>
78407487f758 "planemo upload commit d1ebc78155f57c87d8e82c9855b176428e9803ad"
iuc
parents: 0
diff changeset
249 <option value="firmicutes_odb10">firmicutes (orthodb 10)</option>
78407487f758 "planemo upload commit d1ebc78155f57c87d8e82c9855b176428e9803ad"
iuc
parents: 0
diff changeset
250 <option value="flavobacteriales_odb10">flavobacteriales (orthodb 10)</option>
78407487f758 "planemo upload commit d1ebc78155f57c87d8e82c9855b176428e9803ad"
iuc
parents: 0
diff changeset
251 <option value="flavobacteriia_odb10">flavobacteriia (orthodb 10)</option>
78407487f758 "planemo upload commit d1ebc78155f57c87d8e82c9855b176428e9803ad"
iuc
parents: 0
diff changeset
252 <option value="fromanvirus_odb10">fromanvirus (orthodb 10)</option>
78407487f758 "planemo upload commit d1ebc78155f57c87d8e82c9855b176428e9803ad"
iuc
parents: 0
diff changeset
253 <option value="fungi_odb10">fungi (orthodb 10)</option>
78407487f758 "planemo upload commit d1ebc78155f57c87d8e82c9855b176428e9803ad"
iuc
parents: 0
diff changeset
254 <option value="fusobacteria_odb10">fusobacteria (orthodb 10)</option>
78407487f758 "planemo upload commit d1ebc78155f57c87d8e82c9855b176428e9803ad"
iuc
parents: 0
diff changeset
255 <option value="fusobacteriales_odb10">fusobacteriales (orthodb 10)</option>
78407487f758 "planemo upload commit d1ebc78155f57c87d8e82c9855b176428e9803ad"
iuc
parents: 0
diff changeset
256 <option value="gammaherpesvirinae_odb10">gammaherpesvirinae (orthodb 10)</option>
78407487f758 "planemo upload commit d1ebc78155f57c87d8e82c9855b176428e9803ad"
iuc
parents: 0
diff changeset
257 <option value="gammaproteobacteria_odb10">gammaproteobacteria (orthodb 10)</option>
78407487f758 "planemo upload commit d1ebc78155f57c87d8e82c9855b176428e9803ad"
iuc
parents: 0
diff changeset
258 <option value="glires_odb10">glires (orthodb 10)</option>
78407487f758 "planemo upload commit d1ebc78155f57c87d8e82c9855b176428e9803ad"
iuc
parents: 0
diff changeset
259 <option value="glomerellales_odb10">glomerellales (orthodb 10)</option>
78407487f758 "planemo upload commit d1ebc78155f57c87d8e82c9855b176428e9803ad"
iuc
parents: 0
diff changeset
260 <option value="guernseyvirinae_odb10">guernseyvirinae (orthodb 10)</option>
78407487f758 "planemo upload commit d1ebc78155f57c87d8e82c9855b176428e9803ad"
iuc
parents: 0
diff changeset
261 <option value="halobacteria_odb10">halobacteria (orthodb 10)</option>
78407487f758 "planemo upload commit d1ebc78155f57c87d8e82c9855b176428e9803ad"
iuc
parents: 0
diff changeset
262 <option value="halobacteriales_odb10">halobacteriales (orthodb 10)</option>
78407487f758 "planemo upload commit d1ebc78155f57c87d8e82c9855b176428e9803ad"
iuc
parents: 0
diff changeset
263 <option value="haloferacales_odb10">haloferacales (orthodb 10)</option>
78407487f758 "planemo upload commit d1ebc78155f57c87d8e82c9855b176428e9803ad"
iuc
parents: 0
diff changeset
264 <option value="helotiales_odb10">helotiales (orthodb 10)</option>
78407487f758 "planemo upload commit d1ebc78155f57c87d8e82c9855b176428e9803ad"
iuc
parents: 0
diff changeset
265 <option value="hemiptera_odb10">hemiptera (orthodb 10)</option>
78407487f758 "planemo upload commit d1ebc78155f57c87d8e82c9855b176428e9803ad"
iuc
parents: 0
diff changeset
266 <option value="herpesviridae_odb10">herpesviridae (orthodb 10)</option>
78407487f758 "planemo upload commit d1ebc78155f57c87d8e82c9855b176428e9803ad"
iuc
parents: 0
diff changeset
267 <option value="hymenoptera_odb10">hymenoptera (orthodb 10)</option>
78407487f758 "planemo upload commit d1ebc78155f57c87d8e82c9855b176428e9803ad"
iuc
parents: 0
diff changeset
268 <option value="hypocreales_odb10">hypocreales (orthodb 10)</option>
78407487f758 "planemo upload commit d1ebc78155f57c87d8e82c9855b176428e9803ad"
iuc
parents: 0
diff changeset
269 <option value="insecta_odb10">insecta (orthodb 10)</option>
78407487f758 "planemo upload commit d1ebc78155f57c87d8e82c9855b176428e9803ad"
iuc
parents: 0
diff changeset
270 <option value="iridoviridae_odb10">iridoviridae (orthodb 10)</option>
78407487f758 "planemo upload commit d1ebc78155f57c87d8e82c9855b176428e9803ad"
iuc
parents: 0
diff changeset
271 <option value="lactobacillales_odb10">lactobacillales (orthodb 10)</option>
78407487f758 "planemo upload commit d1ebc78155f57c87d8e82c9855b176428e9803ad"
iuc
parents: 0
diff changeset
272 <option value="laurasiatheria_odb10">laurasiatheria (orthodb 10)</option>
78407487f758 "planemo upload commit d1ebc78155f57c87d8e82c9855b176428e9803ad"
iuc
parents: 0
diff changeset
273 <option value="legionellales_odb10">legionellales (orthodb 10)</option>
78407487f758 "planemo upload commit d1ebc78155f57c87d8e82c9855b176428e9803ad"
iuc
parents: 0
diff changeset
274 <option value="leotiomycetes_odb10">leotiomycetes (orthodb 10)</option>
78407487f758 "planemo upload commit d1ebc78155f57c87d8e82c9855b176428e9803ad"
iuc
parents: 0
diff changeset
275 <option value="lepidoptera_odb10">lepidoptera (orthodb 10)</option>
78407487f758 "planemo upload commit d1ebc78155f57c87d8e82c9855b176428e9803ad"
iuc
parents: 0
diff changeset
276 <option value="liliopsida_odb10">liliopsida (orthodb 10)</option>
78407487f758 "planemo upload commit d1ebc78155f57c87d8e82c9855b176428e9803ad"
iuc
parents: 0
diff changeset
277 <option value="mammalia_odb10">mammalia (orthodb 10)</option>
78407487f758 "planemo upload commit d1ebc78155f57c87d8e82c9855b176428e9803ad"
iuc
parents: 0
diff changeset
278 <option value="metazoa_odb10">metazoa (orthodb 10)</option>
78407487f758 "planemo upload commit d1ebc78155f57c87d8e82c9855b176428e9803ad"
iuc
parents: 0
diff changeset
279 <option value="methanobacteria_odb10">methanobacteria (orthodb 10)</option>
78407487f758 "planemo upload commit d1ebc78155f57c87d8e82c9855b176428e9803ad"
iuc
parents: 0
diff changeset
280 <option value="methanococcales_odb10">methanococcales (orthodb 10)</option>
78407487f758 "planemo upload commit d1ebc78155f57c87d8e82c9855b176428e9803ad"
iuc
parents: 0
diff changeset
281 <option value="methanomicrobia_odb10">methanomicrobia (orthodb 10)</option>
78407487f758 "planemo upload commit d1ebc78155f57c87d8e82c9855b176428e9803ad"
iuc
parents: 0
diff changeset
282 <option value="methanomicrobiales_odb10">methanomicrobiales (orthodb 10)</option>
78407487f758 "planemo upload commit d1ebc78155f57c87d8e82c9855b176428e9803ad"
iuc
parents: 0
diff changeset
283 <option value="micrococcales_odb10">micrococcales (orthodb 10)</option>
78407487f758 "planemo upload commit d1ebc78155f57c87d8e82c9855b176428e9803ad"
iuc
parents: 0
diff changeset
284 <option value="microsporidia_odb10">microsporidia (orthodb 10)</option>
78407487f758 "planemo upload commit d1ebc78155f57c87d8e82c9855b176428e9803ad"
iuc
parents: 0
diff changeset
285 <option value="mollicutes_odb10">mollicutes (orthodb 10)</option>
78407487f758 "planemo upload commit d1ebc78155f57c87d8e82c9855b176428e9803ad"
iuc
parents: 0
diff changeset
286 <option value="mollusca_odb10">mollusca (orthodb 10)</option>
78407487f758 "planemo upload commit d1ebc78155f57c87d8e82c9855b176428e9803ad"
iuc
parents: 0
diff changeset
287 <option value="mucorales_odb10">mucorales (orthodb 10)</option>
78407487f758 "planemo upload commit d1ebc78155f57c87d8e82c9855b176428e9803ad"
iuc
parents: 0
diff changeset
288 <option value="mucoromycota_odb10">mucoromycota (orthodb 10)</option>
78407487f758 "planemo upload commit d1ebc78155f57c87d8e82c9855b176428e9803ad"
iuc
parents: 0
diff changeset
289 <option value="mycoplasmatales_odb10">mycoplasmatales (orthodb 10)</option>
78407487f758 "planemo upload commit d1ebc78155f57c87d8e82c9855b176428e9803ad"
iuc
parents: 0
diff changeset
290 <option value="natrialbales_odb10">natrialbales (orthodb 10)</option>
78407487f758 "planemo upload commit d1ebc78155f57c87d8e82c9855b176428e9803ad"
iuc
parents: 0
diff changeset
291 <option value="neisseriales_odb10">neisseriales (orthodb 10)</option>
78407487f758 "planemo upload commit d1ebc78155f57c87d8e82c9855b176428e9803ad"
iuc
parents: 0
diff changeset
292 <option value="nematoda_odb10">nematoda (orthodb 10)</option>
78407487f758 "planemo upload commit d1ebc78155f57c87d8e82c9855b176428e9803ad"
iuc
parents: 0
diff changeset
293 <option value="nitrosomonadales_odb10">nitrosomonadales (orthodb 10)</option>
78407487f758 "planemo upload commit d1ebc78155f57c87d8e82c9855b176428e9803ad"
iuc
parents: 0
diff changeset
294 <option value="nostocales_odb10">nostocales (orthodb 10)</option>
78407487f758 "planemo upload commit d1ebc78155f57c87d8e82c9855b176428e9803ad"
iuc
parents: 0
diff changeset
295 <option value="oceanospirillales_odb10">oceanospirillales (orthodb 10)</option>
78407487f758 "planemo upload commit d1ebc78155f57c87d8e82c9855b176428e9803ad"
iuc
parents: 0
diff changeset
296 <option value="onygenales_odb10">onygenales (orthodb 10)</option>
78407487f758 "planemo upload commit d1ebc78155f57c87d8e82c9855b176428e9803ad"
iuc
parents: 0
diff changeset
297 <option value="oscillatoriales_odb10">oscillatoriales (orthodb 10)</option>
78407487f758 "planemo upload commit d1ebc78155f57c87d8e82c9855b176428e9803ad"
iuc
parents: 0
diff changeset
298 <option value="pahexavirus_odb10">pahexavirus (orthodb 10)</option>
78407487f758 "planemo upload commit d1ebc78155f57c87d8e82c9855b176428e9803ad"
iuc
parents: 0
diff changeset
299 <option value="passeriformes_odb10">passeriformes (orthodb 10)</option>
78407487f758 "planemo upload commit d1ebc78155f57c87d8e82c9855b176428e9803ad"
iuc
parents: 0
diff changeset
300 <option value="pasteurellales_odb10">pasteurellales (orthodb 10)</option>
78407487f758 "planemo upload commit d1ebc78155f57c87d8e82c9855b176428e9803ad"
iuc
parents: 0
diff changeset
301 <option value="peduovirus_odb10">peduovirus (orthodb 10)</option>
78407487f758 "planemo upload commit d1ebc78155f57c87d8e82c9855b176428e9803ad"
iuc
parents: 0
diff changeset
302 <option value="planctomycetes_odb10">planctomycetes (orthodb 10)</option>
78407487f758 "planemo upload commit d1ebc78155f57c87d8e82c9855b176428e9803ad"
iuc
parents: 0
diff changeset
303 <option value="plasmodium_odb10">plasmodium (orthodb 10)</option>
78407487f758 "planemo upload commit d1ebc78155f57c87d8e82c9855b176428e9803ad"
iuc
parents: 0
diff changeset
304 <option value="pleosporales_odb10">pleosporales (orthodb 10)</option>
78407487f758 "planemo upload commit d1ebc78155f57c87d8e82c9855b176428e9803ad"
iuc
parents: 0
diff changeset
305 <option value="poales_odb10">poales (orthodb 10)</option>
78407487f758 "planemo upload commit d1ebc78155f57c87d8e82c9855b176428e9803ad"
iuc
parents: 0
diff changeset
306 <option value="polyporales_odb10">polyporales (orthodb 10)</option>
78407487f758 "planemo upload commit d1ebc78155f57c87d8e82c9855b176428e9803ad"
iuc
parents: 0
diff changeset
307 <option value="poxviridae_odb10">poxviridae (orthodb 10)</option>
78407487f758 "planemo upload commit d1ebc78155f57c87d8e82c9855b176428e9803ad"
iuc
parents: 0
diff changeset
308 <option value="primates_odb10">primates (orthodb 10)</option>
78407487f758 "planemo upload commit d1ebc78155f57c87d8e82c9855b176428e9803ad"
iuc
parents: 0
diff changeset
309 <option value="propionibacteriales_odb10">propionibacteriales (orthodb 10)</option>
78407487f758 "planemo upload commit d1ebc78155f57c87d8e82c9855b176428e9803ad"
iuc
parents: 0
diff changeset
310 <option value="proteobacteria_odb10">proteobacteria (orthodb 10)</option>
78407487f758 "planemo upload commit d1ebc78155f57c87d8e82c9855b176428e9803ad"
iuc
parents: 0
diff changeset
311 <option value="pseudomonadales_odb10">pseudomonadales (orthodb 10)</option>
78407487f758 "planemo upload commit d1ebc78155f57c87d8e82c9855b176428e9803ad"
iuc
parents: 0
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312 <option value="rhizobiales_odb10">rhizobiales (orthodb 10)</option>
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313 <option value="rhizobium-agrobacterium_group_odb10">rhizobium-agrobacterium_group (orthodb 10)</option>
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314 <option value="rhodobacterales_odb10">rhodobacterales (orthodb 10)</option>
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iuc
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315 <option value="rhodospirillales_odb10">rhodospirillales (orthodb 10)</option>
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iuc
parents: 0
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316 <option value="rickettsiales_odb10">rickettsiales (orthodb 10)</option>
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iuc
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317 <option value="rudiviridae_odb10">rudiviridae (orthodb 10)</option>
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318 <option value="saccharomycetes_odb10">saccharomycetes (orthodb 10)</option>
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319 <option value="sauropsida_odb10">sauropsida (orthodb 10)</option>
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iuc
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320 <option value="selenomonadales_odb10">selenomonadales (orthodb 10)</option>
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iuc
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321 <option value="simplexvirus_odb10">simplexvirus (orthodb 10)</option>
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322 <option value="skunavirus_odb10">skunavirus (orthodb 10)</option>
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iuc
parents: 0
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323 <option value="solanales_odb10">solanales (orthodb 10)</option>
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iuc
parents: 0
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324 <option value="sordariomycetes_odb10">sordariomycetes (orthodb 10)</option>
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325 <option value="sphingobacteriia_odb10">sphingobacteriia (orthodb 10)</option>
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326 <option value="sphingomonadales_odb10">sphingomonadales (orthodb 10)</option>
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327 <option value="spirochaetales_odb10">spirochaetales (orthodb 10)</option>
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iuc
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328 <option value="spirochaetes_odb10">spirochaetes (orthodb 10)</option>
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parents: 0
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329 <option value="spirochaetia_odb10">spirochaetia (orthodb 10)</option>
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330 <option value="spounavirinae_odb10">spounavirinae (orthodb 10)</option>
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331 <option value="stramenopiles_odb10">stramenopiles (orthodb 10)</option>
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332 <option value="streptomycetales_odb10">streptomycetales (orthodb 10)</option>
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iuc
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333 <option value="streptosporangiales_odb10">streptosporangiales (orthodb 10)</option>
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iuc
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334 <option value="sulfolobales_odb10">sulfolobales (orthodb 10)</option>
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335 <option value="synechococcales_odb10">synechococcales (orthodb 10)</option>
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336 <option value="synergistetes_odb10">synergistetes (orthodb 10)</option>
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337 <option value="tenericutes_odb10">tenericutes (orthodb 10)</option>
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338 <option value="tequatrovirus_odb10">tequatrovirus (orthodb 10)</option>
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339 <option value="teseptimavirus_odb10">teseptimavirus (orthodb 10)</option>
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340 <option value="tetrapoda_odb10">tetrapoda (orthodb 10)</option>
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341 <option value="tevenvirinae_odb10">tevenvirinae (orthodb 10)</option>
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342 <option value="thaumarchaeota_odb10">thaumarchaeota (orthodb 10)</option>
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343 <option value="thermoanaerobacterales_odb10">thermoanaerobacterales (orthodb 10)</option>
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344 <option value="thermoplasmata_odb10">thermoplasmata (orthodb 10)</option>
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345 <option value="thermoproteales_odb10">thermoproteales (orthodb 10)</option>
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346 <option value="thermoprotei_odb10">thermoprotei (orthodb 10)</option>
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347 <option value="thermotogae_odb10">thermotogae (orthodb 10)</option>
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348 <option value="thiotrichales_odb10">thiotrichales (orthodb 10)</option>
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349 <option value="tissierellales_odb10">tissierellales (orthodb 10)</option>
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350 <option value="tissierellia_odb10">tissierellia (orthodb 10)</option>
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351 <option value="tremellomycetes_odb10">tremellomycetes (orthodb 10)</option>
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352 <option value="tunavirinae_odb10">tunavirinae (orthodb 10)</option>
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353 <option value="varicellovirus_odb10">varicellovirus (orthodb 10)</option>
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354 <option value="verrucomicrobia_odb10">verrucomicrobia (orthodb 10)</option>
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355 <option value="vertebrata_odb10">vertebrata (orthodb 10)</option>
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356 <option value="vibrionales_odb10">vibrionales (orthodb 10)</option>
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357 <option value="viridiplantae_odb10">viridiplantae (orthodb 10)</option>
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358 <option value="xanthomonadales_odb10">xanthomonadales (orthodb 10)</option>
0
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359 </xml>
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360 </macros>