Mercurial > repos > iuc > funannotate_annotate

annotate test-data/predict_bam/Genus_species.stats.json @ 11:9c15ca7e764e draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/funannotate commit 9e3708d04faea0f1be4ea8918e859d6f2c7eb31d
author iuc
date Wed, 26 Jun 2024 09:41:52 +0000
parents a5baa4ff168d
children
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1 {
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2 "format": "annotation",
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3 "command": "/home/abretaud/miniconda3/envs/__funannotate@1.8.7/bin/funannotate predict --input /tmp/tmp2z22js7e/files/c/c/3/dataset_cc3f66b5-ec9b-4669-93d6-4ddeac0e33c1.dat --out output --database /home/abretaud/.planemo/planemo_tmp_z_14xthq/test-data/funannotate_db --species Genus species --isolate --strain --organism other --ploidy 1 --SeqCenter CFMR --SeqAccession 12345 --name FUN_ --numbering 1 --rna_bam /tmp/tmp2z22js7e/files/9/6/5/dataset_965b5091-b838-4f4a-8ec8-9fb84c12cdc5.dat --transcript_evidence /tmp/tmp2z22js7e/files/d/a/e/dataset_daea4ce7-3191-40eb-ad83-b35e9e058d46.dat --p2g_pident 80 --p2g_prefilter diamond --min_training_models 3 --busco_seed_species fly --busco_db insecta --evm-partition-interval 1500 --min_intronlen 10 --max_intronlen 3000 --min_protlen 50 --repeat_filter overlap blast --cpus 1",
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4 "organism": "Genus_species",
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5 "software": {
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6 "name": "funannotate",
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7 "version": "1.8.7",
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114 "secretion": 0
a5baa4ff168d "planemo upload commit 87560553f1dbbd3e0ab7d7157fa5a7f32f61dca1"
iuc
parents:
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115 },
a5baa4ff168d "planemo upload commit 87560553f1dbbd3e0ab7d7157fa5a7f32f61dca1"
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parents:
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116 "pct_exon_overlap_transcript_evidence": 31.48,
a5baa4ff168d "planemo upload commit 87560553f1dbbd3e0ab7d7157fa5a7f32f61dca1"
iuc
parents:
diff changeset
117 "pct_exon_overlap_protein_evidence": 9.26
a5baa4ff168d "planemo upload commit 87560553f1dbbd3e0ab7d7157fa5a7f32f61dca1"
iuc
parents:
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118 }
a5baa4ff168d "planemo upload commit 87560553f1dbbd3e0ab7d7157fa5a7f32f61dca1"
iuc
parents:
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119 }
a5baa4ff168d "planemo upload commit 87560553f1dbbd3e0ab7d7157fa5a7f32f61dca1"
iuc
parents:
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120 }