Mercurial > repos > iuc > funannotate_annotate

comparison test-data/predict_bam/Genus_species.gff3 @ 0:a5baa4ff168d draft

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"planemo upload commit 87560553f1dbbd3e0ab7d7157fa5a7f32f61dca1"
author iuc
date Mon, 04 Oct 2021 19:39:38 +0000
parents
children
comparison
equal deleted inserted replaced
-1:000000000000 0:a5baa4ff168d
1 ##gff-version 3
2 sample funannotate gene 2331 3254 . + . ID=FUN_000001;
3 sample funannotate mRNA 2331 3254 . + . ID=FUN_000001-T1;Parent=FUN_000001;product=hypothetical protein;
4 sample funannotate exon 2331 3254 . + . ID=FUN_000001-T1.exon1;Parent=FUN_000001-T1;
5 sample funannotate CDS 2331 3254 . + 0 ID=FUN_000001-T1.cds;Parent=FUN_000001-T1;
6 sample funannotate gene 4883 5802 . - . ID=FUN_000002;
7 sample funannotate mRNA 4883 5802 . - . ID=FUN_000002-T1;Parent=FUN_000002;product=hypothetical protein;
8 sample funannotate exon 5797 5802 . - . ID=FUN_000002-T1.exon1;Parent=FUN_000002-T1;
9 sample funannotate exon 4883 5539 . - . ID=FUN_000002-T1.exon2;Parent=FUN_000002-T1;
10 sample funannotate CDS 5797 5802 . - 0 ID=FUN_000002-T1.cds;Parent=FUN_000002-T1;
11 sample funannotate CDS 4883 5539 . - 0 ID=FUN_000002-T1.cds;Parent=FUN_000002-T1;
12 sample funannotate gene 8696 10557 . - . ID=FUN_000003;
13 sample funannotate mRNA 8696 10557 . - . ID=FUN_000003-T1;Parent=FUN_000003;product=hypothetical protein;
14 sample funannotate exon 10549 10557 . - . ID=FUN_000003-T1.exon1;Parent=FUN_000003-T1;
15 sample funannotate exon 8696 10462 . - . ID=FUN_000003-T1.exon2;Parent=FUN_000003-T1;
16 sample funannotate CDS 10549 10557 . - 0 ID=FUN_000003-T1.cds;Parent=FUN_000003-T1;
17 sample funannotate CDS 8696 10462 . - 0 ID=FUN_000003-T1.cds;Parent=FUN_000003-T1;
18 sample funannotate gene 14247 15214 . - . ID=FUN_000004;
19 sample funannotate mRNA 14247 15214 . - . ID=FUN_000004-T1;Parent=FUN_000004;product=hypothetical protein;
20 sample funannotate exon 15209 15214 . - . ID=FUN_000004-T1.exon1;Parent=FUN_000004-T1;
21 sample funannotate exon 14247 14648 . - . ID=FUN_000004-T1.exon2;Parent=FUN_000004-T1;
22 sample funannotate CDS 15209 15214 . - 0 ID=FUN_000004-T1.cds;Parent=FUN_000004-T1;
23 sample funannotate CDS 14247 14648 . - 0 ID=FUN_000004-T1.cds;Parent=FUN_000004-T1;
24 sample funannotate gene 19533 21705 . - . ID=FUN_000005;
25 sample funannotate mRNA 19533 21705 . - . ID=FUN_000005-T1;Parent=FUN_000005;product=hypothetical protein;
26 sample funannotate exon 21700 21705 . - . ID=FUN_000005-T1.exon1;Parent=FUN_000005-T1;
27 sample funannotate exon 19533 21515 . - . ID=FUN_000005-T1.exon2;Parent=FUN_000005-T1;
28 sample funannotate CDS 21700 21705 . - 0 ID=FUN_000005-T1.cds;Parent=FUN_000005-T1;
29 sample funannotate CDS 19533 21515 . - 0 ID=FUN_000005-T1.cds;Parent=FUN_000005-T1;
30 sample funannotate gene 34843 35679 . - . ID=FUN_000006;
31 sample funannotate mRNA 34843 35679 . - . ID=FUN_000006-T1;Parent=FUN_000006;product=hypothetical protein;
32 sample funannotate exon 34843 35679 . - . ID=FUN_000006-T1.exon1;Parent=FUN_000006-T1;
33 sample funannotate CDS 34843 35679 . - 0 ID=FUN_000006-T1.cds;Parent=FUN_000006-T1;
34 sample funannotate gene 40223 44130 . + . ID=FUN_000007;
35 sample funannotate mRNA 40223 44130 . + . ID=FUN_000007-T1;Parent=FUN_000007;product=hypothetical protein;
36 sample funannotate exon 40223 40396 . + . ID=FUN_000007-T1.exon1;Parent=FUN_000007-T1;
37 sample funannotate exon 40659 41193 . + . ID=FUN_000007-T1.exon2;Parent=FUN_000007-T1;
38 sample funannotate exon 41707 42080 . + . ID=FUN_000007-T1.exon3;Parent=FUN_000007-T1;
39 sample funannotate exon 43409 43609 . + . ID=FUN_000007-T1.exon4;Parent=FUN_000007-T1;
40 sample funannotate exon 43678 44130 . + . ID=FUN_000007-T1.exon5;Parent=FUN_000007-T1;
41 sample funannotate CDS 40223 40396 . + 0 ID=FUN_000007-T1.cds;Parent=FUN_000007-T1;
42 sample funannotate CDS 40659 41193 . + 0 ID=FUN_000007-T1.cds;Parent=FUN_000007-T1;
43 sample funannotate CDS 41707 42080 . + 2 ID=FUN_000007-T1.cds;Parent=FUN_000007-T1;
44 sample funannotate CDS 43409 43609 . + 0 ID=FUN_000007-T1.cds;Parent=FUN_000007-T1;
45 sample funannotate CDS 43678 44130 . + 0 ID=FUN_000007-T1.cds;Parent=FUN_000007-T1;
46 sample funannotate gene 45527 47195 . - . ID=FUN_000008;
47 sample funannotate mRNA 45527 47195 . - . ID=FUN_000008-T1;Parent=FUN_000008;product=hypothetical protein;
48 sample funannotate exon 46753 47195 . - . ID=FUN_000008-T1.exon1;Parent=FUN_000008-T1;
49 sample funannotate exon 46214 46330 . - . ID=FUN_000008-T1.exon2;Parent=FUN_000008-T1;
50 sample funannotate exon 45527 46157 . - . ID=FUN_000008-T1.exon3;Parent=FUN_000008-T1;
51 sample funannotate CDS 46753 47195 . - 0 ID=FUN_000008-T1.cds;Parent=FUN_000008-T1;
52 sample funannotate CDS 46214 46330 . - 1 ID=FUN_000008-T1.cds;Parent=FUN_000008-T1;
53 sample funannotate CDS 45527 46157 . - 1 ID=FUN_000008-T1.cds;Parent=FUN_000008-T1;
54 sample funannotate gene 78685 79527 . - . ID=FUN_000009;
55 sample funannotate mRNA 78685 79527 . - . ID=FUN_000009-T1;Parent=FUN_000009;product=hypothetical protein;
56 sample funannotate exon 79519 79527 . - . ID=FUN_000009-T1.exon1;Parent=FUN_000009-T1;
57 sample funannotate exon 78685 79068 . - . ID=FUN_000009-T1.exon2;Parent=FUN_000009-T1;
58 sample funannotate CDS 79519 79527 . - 0 ID=FUN_000009-T1.cds;Parent=FUN_000009-T1;
59 sample funannotate CDS 78685 79068 . - 0 ID=FUN_000009-T1.cds;Parent=FUN_000009-T1;
60 sample funannotate gene 87202 88320 . + . ID=FUN_000010;
61 sample funannotate mRNA 87202 88320 . + . ID=FUN_000010-T1;Parent=FUN_000010;product=hypothetical protein;
62 sample funannotate exon 87202 87207 . + . ID=FUN_000010-T1.exon1;Parent=FUN_000010-T1;
63 sample funannotate exon 88054 88320 . + . ID=FUN_000010-T1.exon2;Parent=FUN_000010-T1;
64 sample funannotate CDS 87202 87207 . + 0 ID=FUN_000010-T1.cds;Parent=FUN_000010-T1;
65 sample funannotate CDS 88054 88320 . + 0 ID=FUN_000010-T1.cds;Parent=FUN_000010-T1;
66 sample funannotate gene 133587 137862 . + . ID=FUN_000011;
67 sample funannotate mRNA 133587 137862 . + . ID=FUN_000011-T1;Parent=FUN_000011;product=hypothetical protein;
68 sample funannotate exon 133587 134504 . + . ID=FUN_000011-T1.exon1;Parent=FUN_000011-T1;
69 sample funannotate exon 134720 135510 . + . ID=FUN_000011-T1.exon2;Parent=FUN_000011-T1;
70 sample funannotate exon 135569 136284 . + . ID=FUN_000011-T1.exon3;Parent=FUN_000011-T1;
71 sample funannotate exon 137516 137862 . + . ID=FUN_000011-T1.exon4;Parent=FUN_000011-T1;
72 sample funannotate CDS 133587 134504 . + 0 ID=FUN_000011-T1.cds;Parent=FUN_000011-T1;
73 sample funannotate CDS 134720 135510 . + 0 ID=FUN_000011-T1.cds;Parent=FUN_000011-T1;
74 sample funannotate CDS 135569 136284 . + 1 ID=FUN_000011-T1.cds;Parent=FUN_000011-T1;
75 sample funannotate CDS 137516 137862 . + 2 ID=FUN_000011-T1.cds;Parent=FUN_000011-T1;
76 sample funannotate gene 144294 164495 . + . ID=FUN_000012;
77 sample funannotate mRNA 144294 164495 . + . ID=FUN_000012-T1;Parent=FUN_000012;product=hypothetical protein;
78 sample funannotate exon 144294 144551 . + . ID=FUN_000012-T1.exon1;Parent=FUN_000012-T1;
79 sample funannotate exon 149012 149244 . + . ID=FUN_000012-T1.exon2;Parent=FUN_000012-T1;
80 sample funannotate exon 149367 149588 . + . ID=FUN_000012-T1.exon3;Parent=FUN_000012-T1;
81 sample funannotate exon 149654 149897 . + . ID=FUN_000012-T1.exon4;Parent=FUN_000012-T1;
82 sample funannotate exon 149952 150112 . + . ID=FUN_000012-T1.exon5;Parent=FUN_000012-T1;
83 sample funannotate exon 150174 150248 . + . ID=FUN_000012-T1.exon6;Parent=FUN_000012-T1;
84 sample funannotate exon 151966 152072 . + . ID=FUN_000012-T1.exon7;Parent=FUN_000012-T1;
85 sample funannotate exon 152314 152429 . + . ID=FUN_000012-T1.exon8;Parent=FUN_000012-T1;
86 sample funannotate exon 152496 152751 . + . ID=FUN_000012-T1.exon9;Parent=FUN_000012-T1;
87 sample funannotate exon 153296 153630 . + . ID=FUN_000012-T1.exon10;Parent=FUN_000012-T1;
88 sample funannotate exon 153689 155122 . + . ID=FUN_000012-T1.exon11;Parent=FUN_000012-T1;
89 sample funannotate exon 155789 158975 . + . ID=FUN_000012-T1.exon12;Parent=FUN_000012-T1;
90 sample funannotate exon 159190 164495 . + . ID=FUN_000012-T1.exon13;Parent=FUN_000012-T1;
91 sample funannotate CDS 144294 144551 . + 0 ID=FUN_000012-T1.cds;Parent=FUN_000012-T1;
92 sample funannotate CDS 149012 149244 . + 0 ID=FUN_000012-T1.cds;Parent=FUN_000012-T1;
93 sample funannotate CDS 149367 149588 . + 1 ID=FUN_000012-T1.cds;Parent=FUN_000012-T1;
94 sample funannotate CDS 149654 149897 . + 1 ID=FUN_000012-T1.cds;Parent=FUN_000012-T1;
95 sample funannotate CDS 149952 150112 . + 0 ID=FUN_000012-T1.cds;Parent=FUN_000012-T1;
96 sample funannotate CDS 150174 150248 . + 1 ID=FUN_000012-T1.cds;Parent=FUN_000012-T1;
97 sample funannotate CDS 151966 152072 . + 1 ID=FUN_000012-T1.cds;Parent=FUN_000012-T1;
98 sample funannotate CDS 152314 152429 . + 2 ID=FUN_000012-T1.cds;Parent=FUN_000012-T1;
99 sample funannotate CDS 152496 152751 . + 0 ID=FUN_000012-T1.cds;Parent=FUN_000012-T1;
100 sample funannotate CDS 153296 153630 . + 2 ID=FUN_000012-T1.cds;Parent=FUN_000012-T1;
101 sample funannotate CDS 153689 155122 . + 0 ID=FUN_000012-T1.cds;Parent=FUN_000012-T1;
102 sample funannotate CDS 155789 158975 . + 0 ID=FUN_000012-T1.cds;Parent=FUN_000012-T1;
103 sample funannotate CDS 159190 164495 . + 2 ID=FUN_000012-T1.cds;Parent=FUN_000012-T1;
104 sample funannotate gene 167121 169212 . + . ID=FUN_000013;
105 sample funannotate mRNA 167121 169212 . + . ID=FUN_000013-T1;Parent=FUN_000013;product=hypothetical protein;
106 sample funannotate exon 167121 168360 . + . ID=FUN_000013-T1.exon1;Parent=FUN_000013-T1;
107 sample funannotate exon 168722 169212 . + . ID=FUN_000013-T1.exon2;Parent=FUN_000013-T1;
108 sample funannotate CDS 167121 168360 . + 0 ID=FUN_000013-T1.cds;Parent=FUN_000013-T1;
109 sample funannotate CDS 168722 169212 . + 2 ID=FUN_000013-T1.cds;Parent=FUN_000013-T1;
110 sample funannotate gene 176699 178916 . - . ID=FUN_000014;
111 sample funannotate mRNA 176699 178916 . - . ID=FUN_000014-T1;Parent=FUN_000014;product=hypothetical protein;
112 sample funannotate exon 178873 178916 . - . ID=FUN_000014-T1.exon1;Parent=FUN_000014-T1;
113 sample funannotate exon 176887 177172 . - . ID=FUN_000014-T1.exon2;Parent=FUN_000014-T1;
114 sample funannotate exon 176699 176824 . - . ID=FUN_000014-T1.exon3;Parent=FUN_000014-T1;
115 sample funannotate CDS 178873 178916 . - 0 ID=FUN_000014-T1.cds;Parent=FUN_000014-T1;
116 sample funannotate CDS 176887 177172 . - 1 ID=FUN_000014-T1.cds;Parent=FUN_000014-T1;
117 sample funannotate CDS 176699 176824 . - 0 ID=FUN_000014-T1.cds;Parent=FUN_000014-T1;
118 sample funannotate gene 192004 194669 . + . ID=FUN_000015;
119 sample funannotate mRNA 192004 194669 . + . ID=FUN_000015-T1;Parent=FUN_000015;product=hypothetical protein;
120 sample funannotate exon 192004 192067 . + . ID=FUN_000015-T1.exon1;Parent=FUN_000015-T1;
121 sample funannotate exon 193549 193658 . + . ID=FUN_000015-T1.exon2;Parent=FUN_000015-T1;
122 sample funannotate exon 194041 194455 . + . ID=FUN_000015-T1.exon3;Parent=FUN_000015-T1;
123 sample funannotate exon 194518 194669 . + . ID=FUN_000015-T1.exon4;Parent=FUN_000015-T1;
124 sample funannotate CDS 192004 192067 . + 0 ID=FUN_000015-T1.cds;Parent=FUN_000015-T1;
125 sample funannotate CDS 193549 193658 . + 2 ID=FUN_000015-T1.cds;Parent=FUN_000015-T1;
126 sample funannotate CDS 194041 194455 . + 0 ID=FUN_000015-T1.cds;Parent=FUN_000015-T1;
127 sample funannotate CDS 194518 194669 . + 2 ID=FUN_000015-T1.cds;Parent=FUN_000015-T1;
128 sample funannotate gene 209044 210553 . - . ID=FUN_000016;
129 sample funannotate mRNA 209044 210553 . - . ID=FUN_000016-T1;Parent=FUN_000016;product=hypothetical protein;
130 sample funannotate exon 210548 210553 . - . ID=FUN_000016-T1.exon1;Parent=FUN_000016-T1;
131 sample funannotate exon 209044 210474 . - . ID=FUN_000016-T1.exon2;Parent=FUN_000016-T1;
132 sample funannotate CDS 210548 210553 . - 0 ID=FUN_000016-T1.cds;Parent=FUN_000016-T1;
133 sample funannotate CDS 209044 210474 . - 0 ID=FUN_000016-T1.cds;Parent=FUN_000016-T1;
134 sample4 funannotate gene 1092 1466 . - . ID=FUN_000017;
135 sample4 funannotate mRNA 1092 1466 . - . ID=FUN_000017-T1;Parent=FUN_000017;product=hypothetical protein;
136 sample4 funannotate exon 1092 1466 . - . ID=FUN_000017-T1.exon1;Parent=FUN_000017-T1;
137 sample4 funannotate CDS 1092 1466 . - 0 ID=FUN_000017-T1.cds;Parent=FUN_000017-T1;
138 sample4 funannotate gene 2126 3537 . + . ID=FUN_000018;
139 sample4 funannotate mRNA 2126 3537 . + . ID=FUN_000018-T1;Parent=FUN_000018;product=hypothetical protein;
140 sample4 funannotate exon 2126 2199 . + . ID=FUN_000018-T1.exon1;Parent=FUN_000018-T1;
141 sample4 funannotate exon 2258 3224 . + . ID=FUN_000018-T1.exon2;Parent=FUN_000018-T1;
142 sample4 funannotate exon 3284 3537 . + . ID=FUN_000018-T1.exon3;Parent=FUN_000018-T1;
143 sample4 funannotate CDS 2126 2199 . + 0 ID=FUN_000018-T1.cds;Parent=FUN_000018-T1;
144 sample4 funannotate CDS 2258 3224 . + 1 ID=FUN_000018-T1.cds;Parent=FUN_000018-T1;
145 sample4 funannotate CDS 3284 3537 . + 0 ID=FUN_000018-T1.cds;Parent=FUN_000018-T1;