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comparison test-data/predict_scratch/Genus_species.discrepency.report.txt @ 0:a5baa4ff168d draft

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"planemo upload commit 87560553f1dbbd3e0ab7d7157fa5a7f32f61dca1"
author iuc
date Mon, 04 Oct 2021 19:39:38 +0000
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children 9feee7fc49a1
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-1:000000000000 0:a5baa4ff168d
1 Discrepancy Report Results
2
3 Summary
4 DISC_PROTEIN_NAMES:All proteins have same name "hypothetical protein"
5 DISC_SOURCE_QUALS_ASNDISC:taxname (all present, all same)
6 DISC_FEATURE_COUNT:gene: 16 present
7 DISC_FEATURE_COUNT:CDS: 16 present
8 DISC_FEATURE_COUNT:mRNA: 16 present
9 DISC_COUNT_NUCLEOTIDES:4 nucleotide Bioseqs are present
10 JOINED_FEATURES:26 features have joined locations.
11 NO_ANNOTATION:2 bioseqs have no features
12 DISC_QUALITY_SCORES:Quality scores are missing on all sequences.
13 FATAL: DISC_BACTERIAL_PARTIAL_NONEXTENDABLE_PROBLEMS:1 features have partial ends that do not abut the end of the sequence or a gap, and cannot be extended by 3 or fewer nucleotides to do so
14 ONCALLER_COMMENT_PRESENT:4 comment descriptors were found (all same)
15 MISSING_GENOMEASSEMBLY_COMMENTS:4 bioseqs are missing GenomeAssembly structured comments
16 MOLTYPE_NOT_MRNA:4 molecule types are not set as mRNA.
17 TECHNIQUE_NOT_TSA:4 technique are not set as TSA
18 MISSING_STRUCTURED_COMMENT:4 sequences do not include structured comments.
19 MISSING_PROJECT:20 sequences do not include project.
20 DISC_INCONSISTENT_MOLINFO_TECH:Molinfo Technique Report (some missing, all same)
21
22
23 Detailed Report
24
25 DiscRep_ALL:DISC_PROTEIN_NAMES::All proteins have same name "hypothetical protein"
26
27 DiscRep_ALL:DISC_SOURCE_QUALS_ASNDISC::taxname (all present, all same)
28 DiscRep_SUB:DISC_SOURCE_QUALS_ASNDISC::4 sources have 'Genus species' for taxname
29 DiscRep_ALL:DISC_FEATURE_COUNT::gene: 16 present
30 DiscRep_ALL:DISC_FEATURE_COUNT::CDS: 16 present
31 DiscRep_ALL:DISC_FEATURE_COUNT::mRNA: 16 present
32 DiscRep_ALL:DISC_COUNT_NUCLEOTIDES::4 nucleotide Bioseqs are present
33 genome:sample (length 215740)
34 genome:sample2 (length 2030)
35 genome:sample3 (length 2100)
36 genome:sample4 (length 7560)
37
38 DiscRep_ALL:JOINED_FEATURES::26 features have joined locations.
39 DiscRep_SUB:JOINED_FEATURES::26 features have joined location but no exception
40 genome:CDS hypothetical protein (sample4:2126-2199, 2258-3224, 3284->3537) FUN_000016
41 genome:mRNA hypothetical protein (sample4:2126-2199, 2258-3224, 3284->3537) FUN_000016
42 genome:mRNA hypothetical protein (sample:c3142-3138, c3004-2883, c2686-2565) FUN_000002
43 genome:CDS hypothetical protein (sample:c3142-3138, c3004-2883, c2686-2565) FUN_000002
44 genome:mRNA hypothetical protein (sample:c5802-5797, c5539-4937, c4742-4248) FUN_000003
45 genome:CDS hypothetical protein (sample:c5802-5797, c5539-4937, c4742-4248) FUN_000003
46 genome:CDS hypothetical protein (sample:c10664-10657, c10499-8707, c8385-7691) FUN_000004
47 genome:mRNA hypothetical protein (sample:c10664-10657, c10499-8707, c8385-7691) FUN_000004
48 genome:mRNA hypothetical protein (sample:c15214-15209, c14648-14247) FUN_000005
49 genome:CDS hypothetical protein (sample:c15214-15209, c14648-14247) FUN_000005
50 genome:CDS hypothetical protein (sample:15539-15543, 15646-15919, 16485-16619) FUN_000006
51 genome:mRNA hypothetical protein (sample:15539-15543, 15646-15919, 16485-16619) FUN_000006
52 genome:CDS hypothetical protein (sample:c21705-21700, c21515-19638, c19482-18358) FUN_000007
53 genome:mRNA hypothetical protein (sample:c21705-21700, c21515-19638, c19482-18358) FUN_000007
54 genome:CDS hypothetical protein (sample:40223-40396, 40659-41193, 41707-42080, 43409-43609, 43678-44130) FUN_000009
55 genome:mRNA hypothetical protein (sample:40223-40396, 40659-41193, 41707-42080, 43409-43609, 43678-44130) FUN_000009
56 genome:mRNA hypothetical protein (sample:87202-87207, 88054-88320) FUN_000010
57 genome:CDS hypothetical protein (sample:87202-87207, 88054-88320) FUN_000010
58 genome:CDS hypothetical protein (sample:c106221-106216, c104632-104258, c103947-103696, c103618-103229, c103151-102510) FUN_000011
59 genome:mRNA hypothetical protein (sample:c106221-106216, c104632-104258, c103947-103696, c103618-103229, c103151-102510) FUN_000011
60 genome:CDS hypothetical protein (sample:167121-168069, 168722-169212) FUN_000012
61 genome:mRNA hypothetical protein (sample:167121-168069, 168722-169212) FUN_000012
62 genome:CDS hypothetical protein (sample:180262-180267, 180400-180579) FUN_000013
63 genome:mRNA hypothetical protein (sample:180262-180267, 180400-180579) FUN_000013
64 genome:CDS hypothetical protein (sample:c210553-210548, c210474-209053, c208645-208619) FUN_000014
65 genome:mRNA hypothetical protein (sample:c210553-210548, c210474-209053, c208645-208619) FUN_000014
66
67 DiscRep_ALL:NO_ANNOTATION::2 bioseqs have no features
68 genome:sample2 (length 2030)
69 genome:sample3 (length 2100)
70
71 DiscRep_ALL:DISC_QUALITY_SCORES::Quality scores are missing on all sequences.
72
73 FATAL: DiscRep_ALL:DISC_BACTERIAL_PARTIAL_NONEXTENDABLE_PROBLEMS::1 featurepartial ends thands that do not abut the end of the sequence or a gap, and cannot be extended by 3 or fewer nucleotides to do so
74 genome:CDS hypothetical protein (sample4:2126-2199, 2258-3224, 3284->3537) FUN_000016
75
76 DiscRep_ALL:ONCALLER_COMMENT_PRESENT::4 comment descriptors were found (all same)
77 genome:sample:"Annotated using 1.8.7"
78 genome:sample2:"Annotated using 1.8.7"
79 genome:sample3:"Annotated using 1.8.7"
80 genome:sample4:"Annotated using 1.8.7"
81
82 DiscRep_ALL:MISSING_GENOMEASSEMBLY_COMMENTS::4 bioseqs are missing GenomeAssembly structured comments
83 genome:sample (length 215740)
84 genome:sample2 (length 2030)
85 genome:sample3 (length 2100)
86 genome:sample4 (length 7560)
87
88 DiscRep_ALL:MOLTYPE_NOT_MRNA::4 molecule types are not set as mRNA.
89 genome:sample (length 215740)
90 genome:sample2 (length 2030)
91 genome:sample3 (length 2100)
92 genome:sample4 (length 7560)
93
94 DiscRep_ALL:TECHNIQUE_NOT_TSA::4 technique are not set as TSA
95 genome:sample (length 215740)
96 genome:sample2 (length 2030)
97 genome:sample3 (length 2100)
98 genome:sample4 (length 7560)
99
100 DiscRep_ALL:MISSING_STRUCTURED_COMMENT::4 sequences do not include structured comments.
101 genome:sample (length 215740)
102 genome:sample2 (length 2030)
103 genome:sample3 (length 2100)
104 genome:sample4 (length 7560)
105
106 DiscRep_ALL:MISSING_PROJECT::20 sequences do not include project.
107 genome:sample (length 215740)
108 genome:ncbi:FUN_000001-T1 (length 124)
109 genome:ncbi:FUN_000002-T1 (length 82)
110 genome:ncbi:FUN_000003-T1 (length 367)
111 genome:ncbi:FUN_000004-T1 (length 831)
112 genome:ncbi:FUN_000005-T1 (length 135)
113 genome:ncbi:FUN_000006-T1 (length 137)
114 genome:ncbi:FUN_000007-T1 (length 1002)
115 genome:ncbi:FUN_000008-T1 (length 278)
116 genome:ncbi:FUN_000009-T1 (length 578)
117 genome:ncbi:FUN_000010-T1 (length 90)
118 genome:ncbi:FUN_000011-T1 (length 554)
119 genome:ncbi:FUN_000012-T1 (length 479)
120 genome:ncbi:FUN_000013-T1 (length 61)
121 genome:ncbi:FUN_000014-T1 (length 484)
122 genome:sample2 (length 2030)
123 genome:sample3 (length 2100)
124 genome:sample4 (length 7560)
125 genome:ncbi:FUN_000015-T1 (length 124)
126 genome:ncbi:FUN_000016-T1 (length 432)
127
128 DiscRep_ALL:DISC_INCONSISTENT_MOLINFO_TECH::Molinfo Technique Report (some missing, all same)
129 DiscRep_SUB:DISC_INCONSISTENT_MOLINFO_TECH::technique (all missing)
130 DiscRep_SUB:DISC_INCONSISTENT_MOLINFO_TECH::4 Molinfos are missing field technique
131 genome:sample (length 215740)
132 genome:sample2 (length 2030)
133 genome:sample3 (length 2100)
134 genome:sample4 (length 7560)
135